Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QEP23_RS06850 Genome accession   NZ_CP123050
Coordinates   1599607..1600749 (-) Length   380 a.a.
NCBI ID   WP_003810592.1    Uniprot ID   A0A087DQC8
Organism   Bifidobacterium adolescentis strain iVS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594607..1605749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP23_RS06835 (QEP23_06835) hpf 1597624..1598286 (-) 663 WP_003810589.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QEP23_RS06845 (QEP23_06845) - 1598908..1599603 (-) 696 WP_003810591.1 regulatory protein RecX -
  QEP23_RS06850 (QEP23_06850) recA 1599607..1600749 (-) 1143 WP_003810592.1 recombinase RecA Machinery gene
  QEP23_RS06855 (QEP23_06855) - 1601012..1601245 (-) 234 WP_033499690.1 DUF3046 domain-containing protein -
  QEP23_RS06860 (QEP23_06860) - 1601328..1601837 (-) 510 WP_021913821.1 helix-turn-helix domain-containing protein -
  QEP23_RS06865 (QEP23_06865) - 1601900..1602466 (-) 567 WP_035010734.1 CinA family protein -
  QEP23_RS06870 (QEP23_06870) pgsA 1602473..1603147 (-) 675 WP_011743385.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40228.64 Da        Isoelectric Point: 5.3563

>NTDB_id=817982 QEP23_RS06850 WP_003810592.1 1599607..1600749(-) (recA) [Bifidobacterium adolescentis strain iVS-1]
MAQTSAAKNAAQNKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYEGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAAFGLIKPTDQFAEDDGAEDAAGAPDDGKTSKTSKAAKA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=817982 QEP23_RS06850 WP_003810592.1 1599607..1600749(-) (recA) [Bifidobacterium adolescentis strain iVS-1]
ATGGCACAGACGAGCGCGGCAAAGAACGCCGCACAGAACAAGTCCGCGAATGGAATCGATCCGCGCCGTCAGGCCGCGCT
CGACACAGCGCTCGCGCAGGTCGAGAAAAGCTTCGGCAAGGGATCGGCCATGAGACTTGGCGACCGCCCGGAACAGGATG
TCGAGGTCATTCCGACCGGATCCTTGGCTTTGGATATGGCATTAGGCATCGGCGGCCTGCCTAAAGGCCGTATTGTGGAG
ATTTACGGACCGGAATCCTCTGGTAAGACCACATTGGCGCTGCATGTGGTGGCCAATGCCCAGAAGGCCGGCGGTGTGGC
CGCATTCATCGATGCCGAGCATGCGCTCGATCCGGTCTATGCCCGTAAGCTGGGCGTCGACACCGATTCGTTGATCGTCT
CTCAGCCGGACAATGGCGAGCAGGCATTGGAAATCGCCGACATGCTGATTCGTTCCGGCGCGCTTGACGTGATTGTTATC
GATTCCGTCGCGGCCTTGGTGCCGAAAGCGGAAATCGAAGGCGAGATGGGAGACAGCCATGTCGGTCTGCAGGCGCGCCT
GATGAGTCAGGCGTTGCGTAAGATGACCGGTGCGCTGGCGCAAGCCGGTACCACCGCCATCTTCATCAACCAGTTGCGTG
AGAAAATTGGCGTGTTCTTCGGTAATCCGGAGACCACCACCGGCGGCAAGGCATTGAAGTTCTACGCGTCCGTACGTATG
GACATCCGCCGTATCCAGACCATTAAGAACGGTGATGAGGCTGTCGGCAACCGTACCAAGGTCAAGGTTGTTAAGAACAA
GATGGCTCCGCCGTTCAAGACCGCCGAATTCGATGTGCTGTACGGCGAGGGCATCTCCAAGGAAGGTTCCGTGCTTGATA
TGGCGTTGCAGGCCAACGTCGTCAAAAAGTCTGGCTCGTGGTTCACCTATGAGGGCGACCAGCTGGGGCAAGGACGCGAA
AACGTGCGTCAGTTCCTCAAGGACAATCCGGAACTCACAGAGGAAATCGAGAACAAGGTCAAGGCGGCATTCGGTCTGAT
CAAACCTACCGACCAGTTCGCCGAGGACGATGGGGCGGAGGACGCCGCGGGCGCGCCGGATGATGGTAAGACGTCTAAAA
CTTCAAAAGCCGCCAAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087DQC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.723

90.263

0.584
  recA Acinetobacter baumannii D1279779

66.254

85

0.563
  recA Vibrio cholerae strain A1552

62.029

90.789

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.029

90.789

0.563
  recA Ralstonia pseudosolanacearum GMI1000

67.732

82.368

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

65.432

85.263

0.558
  recA Pseudomonas stutzeri DSM 10701

64.724

85.789

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.923

85.526

0.555
  recA Streptococcus mitis NCTC 12261

63.526

86.579

0.55
  recA Streptococcus mitis SK321

63.526

86.579

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

90.263

0.55
  recA Glaesserella parasuis strain SC1401

62.388

88.158

0.55
  recA Streptococcus pneumoniae Rx1

62.918

86.579

0.545
  recA Streptococcus pneumoniae TIGR4

62.918

86.579

0.545
  recA Streptococcus pneumoniae R6

62.918

86.579

0.545
  recA Streptococcus pneumoniae D39

62.918

86.579

0.545
  recA Neisseria gonorrhoeae strain FA1090

65.397

82.895

0.542
  recA Neisseria gonorrhoeae MS11

65.397

82.895

0.542
  recA Neisseria gonorrhoeae MS11

65.397

82.895

0.542
  recA Streptococcus pyogenes NZ131

62.424

86.842

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.177

89.211

0.537
  recA Lactococcus lactis subsp. cremoris KW2

62.006

86.579

0.537
  recA Streptococcus mutans UA159

61.818

86.842

0.537
  recA Helicobacter pylori strain NCTC11637

61.89

86.316

0.534
  recA Helicobacter pylori 26695

61.89

86.316

0.534
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

85.263

0.532