Detailed information NTG0817896

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: R3L06_RS05235
• Genome accession: NZ_CP137069
• Coordinates: 1072733..1073851 (+)
• Length: 372 a.a.
• NCBI ID: WP_000347039.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain SNUBHAB0062
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1067733..1078851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L06_RS05225 (R3L06_05225)	-	1070849..1071541 (-)	693	WP_001108512.1	YggS family pyridoxal phosphate-dependent enzyme	-
R3L06_RS05230 (R3L06_05230)	pilT	1071668..1072705 (+)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
R3L06_RS05235 (R3L06_05235)	pilU	1072733..1073851 (+)	1119	WP_000347039.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
R3L06_RS05240 (R3L06_05240)	fur	1073921..1074358 (-)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
R3L06_RS05245 (R3L06_05245)	-	1074470..1074868 (+)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
R3L06_RS05250 (R3L06_05250)	-	1074923..1075246 (-)	324	WP_000442587.1	RnfH family protein	-
R3L06_RS05255 (R3L06_05255)	-	1075246..1076313 (-)	1068	WP_002019572.1	hypothetical protein	-
R3L06_RS05260 (R3L06_05260)	-	1076466..1076921 (-)	456	WP_000782976.1	bacteriohemerythrin	-
R3L06_RS05265 (R3L06_05265)	-	1077174..1078022 (-)	849	WP_000336548.1	class II glutamine amidotransferase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41933.13 Da
• Isoelectric Point: 6.6944

>NTDB_id=817896 R3L06_RS05235 WP_000347039.1 1072733..1073851(+) (pilU) [Acinetobacter baumannii strain SNUBHAB0062]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=817896 R3L06_RS05235 WP_000347039.1 1072733..1073851(+) (pilU) [Acinetobacter baumannii strain SNUBHAB0062]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (31-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.565	98.925	0.688
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395