Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QEO92_RS09790 Genome accession   NZ_CP123000
Coordinates   1919631..1920173 (+) Length   180 a.a.
NCBI ID   WP_037146883.1    Uniprot ID   A0A095XLW6
Organism   Neorhizobium petrolearium strain OS53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1914631..1925173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO92_RS09780 (QEO92_09780) - 1915624..1916436 (-) 813 WP_227702874.1 DUF72 domain-containing protein -
  QEO92_RS09785 (QEO92_09785) uvrA 1916460..1919381 (-) 2922 WP_227702875.1 excinuclease ABC subunit UvrA -
  QEO92_RS09790 (QEO92_09790) ssb 1919631..1920173 (+) 543 WP_037146883.1 single-stranded DNA-binding protein Machinery gene
  QEO92_RS09795 (QEO92_09795) - 1920240..1921412 (-) 1173 WP_037146886.1 HPP family protein -
  QEO92_RS09800 (QEO92_09800) - 1921490..1922119 (-) 630 WP_037146889.1 MarC family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19400.14 Da        Isoelectric Point: 5.3460

>NTDB_id=817740 QEO92_RS09790 WP_037146883.1 1919631..1920173(+) (ssb) [Neorhizobium petrolearium strain OS53]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHNVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQSGNDRYTTEVVLQGFNSTLTMLDGRGEGGGDRGGYGGGGNNRVGNDYGGGDFGGGDDYGRPSGGPARG
GSQQPAGGNFSRDLDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=817740 QEO92_RS09790 WP_037146883.1 1919631..1920173(+) (ssb) [Neorhizobium petrolearium strain OS53]
ATGGCTGGTAGCGTGAACAAGGTCATTCTGGTGGGGAATGTCGGGGCCGATCCGGAAATTCGCCGCACACAGGATGGCCG
GCCGATCGCCAACCTGCGCATTGCGACCTCCGAGACCTGGCGCGACCGGAATTCCGGCGAGCGCCGGGAAAAGACCGAAT
GGCACAATGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTTGTCGAGCAGTATGTGAAGAAGGGCGCCAAGCTTTATATC
GAAGGCCAGTTGCAGACCCGCAAATGGCAGGACCAGAGCGGCAACGACCGTTATACGACGGAAGTGGTGCTGCAGGGTTT
CAATTCGACGCTCACCATGCTCGATGGTCGGGGTGAGGGCGGTGGCGATCGAGGTGGTTACGGTGGCGGCGGTAACAATC
GCGTCGGGAACGACTACGGCGGCGGTGACTTCGGTGGTGGCGATGATTATGGCCGGCCGTCGGGCGGCCCGGCTCGTGGT
GGCAGCCAGCAGCCGGCAGGCGGGAATTTCTCGCGCGATCTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A095XLW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.073

100

0.489
  ssb Vibrio cholerae strain A1552

48.864

97.778

0.478
  ssb Neisseria meningitidis MC58

37.43

99.444

0.372
  ssb Neisseria gonorrhoeae MS11

37.43

99.444

0.372