Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLUL033_RS09190 Genome accession   NZ_CP122980
Coordinates   1836210..1837193 (-) Length   327 a.a.
NCBI ID   WP_332370476.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831210..1842193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL033_RS09175 (LLUL033_09180) - 1832563..1833489 (-) 927 WP_332370477.1 foldase -
  LLUL033_RS09180 (LLUL033_09185) - 1833635..1834327 (-) 693 WP_011835659.1 O-methyltransferase -
  LLUL033_RS09185 (LLUL033_09190) pepF 1834330..1836135 (-) 1806 WP_011835660.1 oligoendopeptidase F Regulator
  LLUL033_RS09190 (LLUL033_09195) coiA 1836210..1837193 (-) 984 WP_332370476.1 competence protein CoiA family protein Machinery gene
  LLUL033_RS09195 (LLUL033_09200) - 1837268..1838353 (-) 1086 WP_014735114.1 YdcF family protein -
  LLUL033_RS09200 (LLUL033_09205) - 1838506..1839354 (-) 849 WP_011835662.1 alpha/beta hydrolase -
  LLUL033_RS09205 (LLUL033_09210) - 1839563..1840984 (-) 1422 WP_011676727.1 NCS2 family permease -
  LLUL033_RS09210 (LLUL033_09215) - 1841291..1842127 (+) 837 WP_011835663.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39149.75 Da        Isoelectric Point: 9.8201

>NTDB_id=817682 LLUL033_RS09190 WP_332370476.1 1836210..1837193(-) (coiA) [Lactococcus cremoris strain UL033]
MLTAIDENNKIINLLELDRKELTGKFYCPSCHSELLIKNGQIKVLHFAHKSLKSCNLWLENESDQHLGLKKILYQWFKKT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTELQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDSKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLENFTDEKTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPRFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=817682 LLUL033_RS09190 WP_332370476.1 1836210..1837193(-) (coiA) [Lactococcus cremoris strain UL033]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGACCGCAAAGAATTGACCGGAAAATTTTA
TTGTCCTTCTTGTCATTCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGACCAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAAGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGTCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAGAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGTGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCTCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATTCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAATTTTACTGACGAAAAGACAATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCCGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

98.165

100

0.982
  coiA Streptococcus mitis NCTC 12261

44.72

98.471

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428