Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBD29_RS09890 Genome accession   NZ_CP122960
Coordinates   1944785..1945291 (+) Length   168 a.a.
NCBI ID   WP_280097924.1    Uniprot ID   -
Organism   Amylibacter sp. IMCC11727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1939785..1950291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD29_RS09875 (QBD29_09875) mmsB 1940041..1940913 (+) 873 WP_280097921.1 3-hydroxyisobutyrate dehydrogenase -
  QBD29_RS09880 (QBD29_09880) uvrA 1941041..1943899 (-) 2859 WP_280097922.1 excinuclease ABC subunit UvrA -
  QBD29_RS09885 (QBD29_09885) - 1944017..1944601 (-) 585 WP_280097923.1 lytic transglycosylase domain-containing protein -
  QBD29_RS09890 (QBD29_09890) ssb 1944785..1945291 (+) 507 WP_280097924.1 single-stranded DNA-binding protein Machinery gene
  QBD29_RS09895 (QBD29_09895) - 1945343..1946731 (+) 1389 WP_280097925.1 hypothetical protein -
  QBD29_RS09900 (QBD29_09900) gyrA 1946856..1949633 (+) 2778 WP_280097926.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17754.32 Da        Isoelectric Point: 4.9837

>NTDB_id=817542 QBD29_RS09890 WP_280097924.1 1944785..1945291(+) (ssb) [Amylibacter sp. IMCC11727]
MAGSLNKVMIIGNLGRDPEVRSFQNGGKVCNLTVATSERWRDKNTGENREKTEWHRVAIFSEGLVRVCEQYLRKGSKVFI
EGQLQTRKWQDQSGNDRYSTEVVIQGYNGTLTMLDGRDGGGGGYGGGDSGGGYDQGGGYGSGGSFGGGSQGGPQGGGGSS
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=817542 QBD29_RS09890 WP_280097924.1 1944785..1945291(+) (ssb) [Amylibacter sp. IMCC11727]
ATGGCCGGTAGTTTGAATAAAGTAATGATCATCGGAAATCTGGGGCGTGACCCAGAGGTGCGTTCGTTTCAGAATGGCGG
CAAGGTCTGTAACCTGACCGTTGCCACATCTGAACGCTGGCGTGATAAAAACACAGGTGAAAACCGCGAAAAGACGGAAT
GGCACCGCGTTGCGATTTTTTCTGAAGGTTTGGTGCGCGTCTGCGAGCAATATCTGCGTAAAGGCTCCAAAGTCTTTATC
GAAGGCCAATTGCAAACACGCAAGTGGCAGGACCAAAGCGGCAACGACCGGTATTCCACAGAGGTGGTGATCCAAGGGTA
TAACGGCACTTTGACCATGCTGGATGGCCGCGATGGTGGCGGTGGCGGCTATGGCGGCGGCGACAGCGGTGGTGGCTATG
ACCAAGGGGGCGGTTACGGCAGTGGCGGCAGCTTTGGCGGCGGATCACAGGGCGGCCCACAAGGGGGTGGCGGCAGCTCT
GATCTTGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.409

100

0.56
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.53
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.411