Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R4248_RS18320 Genome accession   NZ_CP136993
Coordinates   3758039..3758707 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain HH35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3753039..3763707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4248_RS18290 (R4248_18290) yicC 3753059..3753922 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  R4248_RS18295 (R4248_18295) rph 3754049..3754765 (+) 717 WP_001247093.1 ribonuclease PH -
  R4248_RS18300 (R4248_18300) pyrE 3754830..3755471 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  R4248_RS18305 (R4248_18305) slmA 3755508..3756104 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  R4248_RS18310 (R4248_18310) dut 3756211..3756669 (-) 459 WP_000976070.1 dUTP diphosphatase -
  R4248_RS18315 (R4248_18315) coaBC 3756647..3757867 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  R4248_RS18320 (R4248_18320) radC 3758039..3758707 (+) 669 WP_001298959.1 RadC family protein Machinery gene
  R4248_RS18325 (R4248_18325) rpmB 3758924..3759160 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  R4248_RS18330 (R4248_18330) rpmG 3759181..3759348 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  R4248_RS18335 (R4248_18335) mutM 3759446..3760255 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  R4248_RS18340 (R4248_18340) coaD 3760294..3760773 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  R4248_RS18345 (R4248_18345) waaA 3760781..3762058 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  R4248_RS18350 (R4248_18350) rfaQ 3762465..3763535 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=817484 R4248_RS18320 WP_001298959.1 3758039..3758707(+) (radC) [Escherichia coli strain HH35]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=817484 R4248_RS18320 WP_001298959.1 3758039..3758707(+) (radC) [Escherichia coli strain HH35]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496