Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   QAD58_RS00755 Genome accession   NZ_CP122956
Coordinates   156191..157153 (+) Length   320 a.a.
NCBI ID   WP_286448461.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151191..162153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS00725 (QAD58_00730) panD 152598..152948 (+) 351 WP_286448460.1 aspartate 1-decarboxylase -
  QAD58_RS00730 (QAD58_00735) - 152959..153252 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  QAD58_RS00735 (QAD58_00740) - 153252..154247 (+) 996 WP_286448966.1 PDZ domain-containing protein -
  QAD58_RS00740 (QAD58_00745) comB6 154255..155310 (+) 1056 WP_286448969.1 P-type conjugative transfer protein TrbL Machinery gene
  QAD58_RS00745 (QAD58_00750) comB7 155326..155451 (+) 126 WP_050833158.1 hypothetical protein Machinery gene
  QAD58_RS00750 (QAD58_00755) comB8 155448..156191 (+) 744 WP_180583766.1 virB8 family protein Machinery gene
  QAD58_RS00755 (QAD58_00760) comB9 156191..157153 (+) 963 WP_286448461.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAD58_RS00760 (QAD58_00765) comB10 157146..158282 (+) 1137 WP_286448462.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD58_RS00765 (QAD58_00770) - 158352..159764 (+) 1413 WP_286448463.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAD58_RS00770 (QAD58_00775) gmd 159778..160923 (+) 1146 WP_286448464.1 GDP-mannose 4,6-dehydratase -
  QAD58_RS00775 (QAD58_00780) - 160916..161848 (+) 933 WP_001002433.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36813.44 Da        Isoelectric Point: 9.3756

>NTDB_id=817484 QAD58_RS00755 WP_286448461.1 156191..157153(+) (comB9) [Helicobacter pylori strain BT112]
MRKVLCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKVPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=817484 QAD58_RS00755 WP_286448461.1 156191..157153(+) (comB9) [Helicobacter pylori strain BT112]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGTCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGACGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.331

100

0.941