Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAD58_RS00750 Genome accession   NZ_CP122956
Coordinates   155448..156191 (+) Length   247 a.a.
NCBI ID   WP_180583766.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150448..161191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS00725 (QAD58_00730) panD 152598..152948 (+) 351 WP_286448460.1 aspartate 1-decarboxylase -
  QAD58_RS00730 (QAD58_00735) - 152959..153252 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  QAD58_RS00735 (QAD58_00740) - 153252..154247 (+) 996 WP_286448966.1 PDZ domain-containing protein -
  QAD58_RS00740 (QAD58_00745) comB6 154255..155310 (+) 1056 WP_286448969.1 P-type conjugative transfer protein TrbL Machinery gene
  QAD58_RS00745 (QAD58_00750) comB7 155326..155451 (+) 126 WP_050833158.1 hypothetical protein Machinery gene
  QAD58_RS00750 (QAD58_00755) comB8 155448..156191 (+) 744 WP_180583766.1 virB8 family protein Machinery gene
  QAD58_RS00755 (QAD58_00760) comB9 156191..157153 (+) 963 WP_286448461.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAD58_RS00760 (QAD58_00765) comB10 157146..158282 (+) 1137 WP_286448462.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD58_RS00765 (QAD58_00770) - 158352..159764 (+) 1413 WP_286448463.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAD58_RS00770 (QAD58_00775) gmd 159778..160923 (+) 1146 WP_286448464.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28685.86 Da        Isoelectric Point: 8.9546

>NTDB_id=817483 QAD58_RS00750 WP_180583766.1 155448..156191(+) (comB8) [Helicobacter pylori strain BT112]
MKEKPFNSEQLNYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=817483 QAD58_RS00750 WP_180583766.1 155448..156191(+) (comB8) [Helicobacter pylori strain BT112]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGAACTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGCTCTAAGGTGTGGCAACGCTTTGAGGATTTGATCAAAACACAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968