Detailed information NTG0817481

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAD58_RS00740
• Genome accession: NZ_CP122956
• Coordinates: 154255..155310 (+)
• Length: 351 a.a.
• NCBI ID: WP_286448969.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BT112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149255..160310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD58_RS00710 (QAD58_00715)	-	149678..150091 (+)	414	WP_001023005.1	universal stress protein	-
QAD58_RS00715 (QAD58_00720)	-	150111..150386 (+)	276	WP_120929046.1	ATP-dependent Clp protease adaptor ClpS	-
QAD58_RS00720 (QAD58_00725)	-	150386..152608 (+)	2223	WP_286448459.1	ATP-dependent Clp protease ATP-binding subunit	-
QAD58_RS00725 (QAD58_00730)	panD	152598..152948 (+)	351	WP_286448460.1	aspartate 1-decarboxylase	-
QAD58_RS00730 (QAD58_00735)	-	152959..153252 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
QAD58_RS00735 (QAD58_00740)	-	153252..154247 (+)	996	WP_286448966.1	PDZ domain-containing protein	-
QAD58_RS00740 (QAD58_00745)	comB6	154255..155310 (+)	1056	WP_286448969.1	P-type conjugative transfer protein TrbL	Machinery gene
QAD58_RS00745 (QAD58_00750)	comB7	155326..155451 (+)	126	WP_050833158.1	hypothetical protein	Machinery gene
QAD58_RS00750 (QAD58_00755)	comB8	155448..156191 (+)	744	WP_180583766.1	virB8 family protein	Machinery gene
QAD58_RS00755 (QAD58_00760)	comB9	156191..157153 (+)	963	WP_286448461.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAD58_RS00760 (QAD58_00765)	comB10	157146..158282 (+)	1137	WP_286448462.1	DNA type IV secretion system protein ComB10	Machinery gene
QAD58_RS00765 (QAD58_00770)	-	158352..159764 (+)	1413	WP_286448463.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39857.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=817481 QAD58_RS00740 WP_286448969.1 154255..155310(+) (comB6) [Helicobacter pylori strain BT112]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSGSALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALIFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817481 QAD58_RS00740 WP_286448969.1 154255..155310(+) (comB6) [Helicobacter pylori strain BT112]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGGTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAT
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTATTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966