Detailed information NTG0817465

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QAP03_RS00950
• Genome accession: NZ_CP122955
• Coordinates: 195935..197071 (+)
• Length: 378 a.a.
• NCBI ID: WP_180411350.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS27-2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 190935..202071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP03_RS00915 (QAP03_00915)	panD	191385..191738 (+)	354	WP_000142250.1	aspartate 1-decarboxylase	-
QAP03_RS00920 (QAP03_00920)	-	191741..192043 (+)	303	WP_120956962.1	YbaB/EbfC family nucleoid-associated protein	-
QAP03_RS00925 (QAP03_00925)	-	192043..193047 (+)	1005	WP_286491159.1	PDZ domain-containing protein	-
QAP03_RS00930 (QAP03_00930)	comB6	193056..194111 (+)	1056	WP_286491158.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP03_RS00935 (QAP03_00935)	comB7	194127..194240 (+)	114	WP_001217870.1	hypothetical protein	Machinery gene
QAP03_RS00940 (QAP03_00940)	comB8	194237..194980 (+)	744	WP_001208392.1	virB8 family protein	Machinery gene
QAP03_RS00945 (QAP03_00945)	comB9	194980..195942 (+)	963	WP_286491157.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP03_RS00950 (QAP03_00950)	comB10	195935..197071 (+)	1137	WP_180411350.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP03_RS00955 (QAP03_00955)	-	197141..198553 (+)	1413	WP_286491156.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP03_RS00960 (QAP03_00960)	gmd	198567..199711 (+)	1145	Protein_182	GDP-mannose 4,6-dehydratase	-
QAP03_RS00965 (QAP03_00965)	-	199704..200636 (+)	933	WP_286491155.1	GDP-L-fucose synthase	-
QAP03_RS00970 (QAP03_00970)	-	201012..201296 (-)	285	WP_286491154.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42086.66 Da
• Isoelectric Point: 9.8461

>NTDB_id=817465 QAP03_RS00950 WP_180411350.1 195935..197071(+) (comB10) [Helicobacter pylori strain BS27-2]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=817465 QAP03_RS00950 WP_180411350.1 195935..197071(+) (comB10) [Helicobacter pylori strain BS27-2]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCT
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955