Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   QAP03_RS00945 Genome accession   NZ_CP122955
Coordinates   194980..195942 (+) Length   320 a.a.
NCBI ID   WP_286491157.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189980..200942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS00915 (QAP03_00915) panD 191385..191738 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  QAP03_RS00920 (QAP03_00920) - 191741..192043 (+) 303 WP_120956962.1 YbaB/EbfC family nucleoid-associated protein -
  QAP03_RS00925 (QAP03_00925) - 192043..193047 (+) 1005 WP_286491159.1 PDZ domain-containing protein -
  QAP03_RS00930 (QAP03_00930) comB6 193056..194111 (+) 1056 WP_286491158.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP03_RS00935 (QAP03_00935) comB7 194127..194240 (+) 114 WP_001217870.1 hypothetical protein Machinery gene
  QAP03_RS00940 (QAP03_00940) comB8 194237..194980 (+) 744 WP_001208392.1 virB8 family protein Machinery gene
  QAP03_RS00945 (QAP03_00945) comB9 194980..195942 (+) 963 WP_286491157.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP03_RS00950 (QAP03_00950) comB10 195935..197071 (+) 1137 WP_180411350.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP03_RS00955 (QAP03_00955) - 197141..198553 (+) 1413 WP_286491156.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP03_RS00960 (QAP03_00960) gmd 198567..199711 (+) 1145 Protein_182 GDP-mannose 4,6-dehydratase -
  QAP03_RS00965 (QAP03_00965) - 199704..200636 (+) 933 WP_286491155.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36757.29 Da        Isoelectric Point: 9.3801

>NTDB_id=817464 QAP03_RS00945 WP_286491157.1 194980..195942(+) (comB9) [Helicobacter pylori strain BS27-2]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYRIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNSVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=817464 QAP03_RS00945 WP_286491157.1 194980..195942(+) (comB9) [Helicobacter pylori strain BS27-2]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACCTTGAATGTTGATTACTTTCAAGGGCAAACCTATAGAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCTTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACTCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

91.104

100

0.928