Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAP03_RS00940 Genome accession   NZ_CP122955
Coordinates   194237..194980 (+) Length   247 a.a.
NCBI ID   WP_001208392.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189237..199980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS00915 (QAP03_00915) panD 191385..191738 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  QAP03_RS00920 (QAP03_00920) - 191741..192043 (+) 303 WP_120956962.1 YbaB/EbfC family nucleoid-associated protein -
  QAP03_RS00925 (QAP03_00925) - 192043..193047 (+) 1005 WP_286491159.1 PDZ domain-containing protein -
  QAP03_RS00930 (QAP03_00930) comB6 193056..194111 (+) 1056 WP_286491158.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP03_RS00935 (QAP03_00935) comB7 194127..194240 (+) 114 WP_001217870.1 hypothetical protein Machinery gene
  QAP03_RS00940 (QAP03_00940) comB8 194237..194980 (+) 744 WP_001208392.1 virB8 family protein Machinery gene
  QAP03_RS00945 (QAP03_00945) comB9 194980..195942 (+) 963 WP_286491157.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP03_RS00950 (QAP03_00950) comB10 195935..197071 (+) 1137 WP_180411350.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP03_RS00955 (QAP03_00955) - 197141..198553 (+) 1413 WP_286491156.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP03_RS00960 (QAP03_00960) gmd 198567..199711 (+) 1145 Protein_182 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28740.98 Da        Isoelectric Point: 8.9604

>NTDB_id=817463 QAP03_RS00940 WP_001208392.1 194237..194980(+) (comB8) [Helicobacter pylori strain BS27-2]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=817463 QAP03_RS00940 WP_001208392.1 194237..194980(+) (comB8) [Helicobacter pylori strain BS27-2]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGCTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984