Detailed information NTG0817461

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP03_RS00930
• Genome accession: NZ_CP122955
• Coordinates: 193056..194111 (+)
• Length: 351 a.a.
• NCBI ID: WP_286491158.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS27-2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188056..199111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP03_RS00900 (QAP03_00900)	-	188459..188872 (+)	414	WP_001023005.1	universal stress protein	-
QAP03_RS00905 (QAP03_00905)	-	188895..189170 (+)	276	WP_286491161.1	ATP-dependent Clp protease adaptor ClpS	-
QAP03_RS00910 (QAP03_00910)	-	189170..191395 (+)	2226	WP_286491160.1	ATP-dependent Clp protease ATP-binding subunit	-
QAP03_RS00915 (QAP03_00915)	panD	191385..191738 (+)	354	WP_000142250.1	aspartate 1-decarboxylase	-
QAP03_RS00920 (QAP03_00920)	-	191741..192043 (+)	303	WP_120956962.1	YbaB/EbfC family nucleoid-associated protein	-
QAP03_RS00925 (QAP03_00925)	-	192043..193047 (+)	1005	WP_286491159.1	PDZ domain-containing protein	-
QAP03_RS00930 (QAP03_00930)	comB6	193056..194111 (+)	1056	WP_286491158.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP03_RS00935 (QAP03_00935)	comB7	194127..194240 (+)	114	WP_001217870.1	hypothetical protein	Machinery gene
QAP03_RS00940 (QAP03_00940)	comB8	194237..194980 (+)	744	WP_001208392.1	virB8 family protein	Machinery gene
QAP03_RS00945 (QAP03_00945)	comB9	194980..195942 (+)	963	WP_286491157.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP03_RS00950 (QAP03_00950)	comB10	195935..197071 (+)	1137	WP_180411350.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP03_RS00955 (QAP03_00955)	-	197141..198553 (+)	1413	WP_286491156.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39722.66 Da
• Isoelectric Point: 8.8190

>NTDB_id=817461 QAP03_RS00930 WP_286491158.1 193056..194111(+) (comB6) [Helicobacter pylori strain BS27-2]
MNHNAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817461 QAP03_RS00930 WP_286491158.1 193056..194111(+) (comB6) [Helicobacter pylori strain BS27-2]
ATGAACCATAACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAACTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCGTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.587	100	0.946