Detailed information NTG0817322

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QAP02_RS07100
• Genome accession: NZ_CP122948
• Coordinates: 1483086..1484216 (-)
• Length: 376 a.a.
• NCBI ID: WP_286463752.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS21
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1478086..1489216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP02_RS07080 (QAP02_07080)	-	1478847..1479131 (+)	285	WP_120927544.1	hypothetical protein	-
QAP02_RS07085 (QAP02_07085)	-	1479520..1480452 (-)	933	WP_286463739.1	GDP-L-fucose synthase	-
QAP02_RS07090 (QAP02_07090)	gmd	1480445..1481590 (-)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
QAP02_RS07095 (QAP02_07095)	-	1481604..1483016 (-)	1413	WP_286463749.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP02_RS07100 (QAP02_07100)	comB10	1483086..1484216 (-)	1131	WP_286463752.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP02_RS07105 (QAP02_07105)	comB9	1484209..1485180 (-)	972	WP_286463754.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP02_RS07110 (QAP02_07110)	comB8	1485180..1485923 (-)	744	WP_140578636.1	virB8 family protein	Machinery gene
QAP02_RS07115 (QAP02_07115)	comB7	1485920..1486033 (-)	114	WP_286463761.1	comB7 lipoprotein	Machinery gene
QAP02_RS07120 (QAP02_07120)	comB6	1486049..1487104 (-)	1056	WP_286464815.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP02_RS07125 (QAP02_07125)	-	1487112..1488107 (-)	996	WP_286464816.1	PDZ domain-containing protein	-
QAP02_RS07130 (QAP02_07130)	-	1488107..1488409 (-)	303	WP_181229633.1	YbaB/EbfC family nucleoid-associated protein	-
QAP02_RS07135 (QAP02_07135)	panD	1488412..1488765 (-)	354	WP_286463764.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41985.47 Da
• Isoelectric Point: 9.7760

>NTDB_id=817322 QAP02_RS07100 WP_286463752.1 1483086..1484216(-) (comB10) [Helicobacter pylori strain BS21]
MNKWLKGALVFAGGFATIITISLIYHQKPKTPLNNQQNLLNDDEVKYPLQDYTFTQNPQSTPTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVVREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=817322 QAP02_RS07100 WP_286463752.1 1483086..1484216(-) (comB10) [Helicobacter pylori strain BS21]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTACCATCA
AAAGCCAAAAACCCCCCTAAATAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGTCAACTCCTACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTACTAACCCTCCTATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTCAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAT
ATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAGATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGAAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGGTTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.947	100	0.949