Detailed information NTG0817326

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP02_RS07120
• Genome accession: NZ_CP122948
• Coordinates: 1486049..1487104 (-)
• Length: 351 a.a.
• NCBI ID: WP_286464815.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS21
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1481049..1492104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP02_RS07095 (QAP02_07095)	-	1481604..1483016 (-)	1413	WP_286463749.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP02_RS07100 (QAP02_07100)	comB10	1483086..1484216 (-)	1131	WP_286463752.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP02_RS07105 (QAP02_07105)	comB9	1484209..1485180 (-)	972	WP_286463754.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP02_RS07110 (QAP02_07110)	comB8	1485180..1485923 (-)	744	WP_140578636.1	virB8 family protein	Machinery gene
QAP02_RS07115 (QAP02_07115)	comB7	1485920..1486033 (-)	114	WP_286463761.1	comB7 lipoprotein	Machinery gene
QAP02_RS07120 (QAP02_07120)	comB6	1486049..1487104 (-)	1056	WP_286464815.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP02_RS07125 (QAP02_07125)	-	1487112..1488107 (-)	996	WP_286464816.1	PDZ domain-containing protein	-
QAP02_RS07130 (QAP02_07130)	-	1488107..1488409 (-)	303	WP_181229633.1	YbaB/EbfC family nucleoid-associated protein	-
QAP02_RS07135 (QAP02_07135)	panD	1488412..1488765 (-)	354	WP_286463764.1	aspartate 1-decarboxylase	-
QAP02_RS07140 (QAP02_07140)	-	1488755..1490980 (-)	2226	WP_286463766.1	ATP-dependent Clp protease ATP-binding subunit	-
QAP02_RS07145 (QAP02_07145)	-	1490980..1491255 (-)	276	WP_286463768.1	ATP-dependent Clp protease adaptor ClpS	-
QAP02_RS07150 (QAP02_07150)	-	1491276..1491689 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39806.72 Da
• Isoelectric Point: 8.8165

>NTDB_id=817326 QAP02_RS07120 WP_286464815.1 1486049..1487104(-) (comB6) [Helicobacter pylori strain BS21]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
TLKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSSHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSRSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817326 QAP02_RS07120 WP_286464815.1 1486049..1487104(-) (comB6) [Helicobacter pylori strain BS21]
ATGAAAAATGACGCTTATGAGATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
ACTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAGCCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTACTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTCAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTAGGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977