Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAP02_RS07110 Genome accession   NZ_CP122948
Coordinates   1485180..1485923 (-) Length   247 a.a.
NCBI ID   WP_140578636.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480180..1490923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS07090 (QAP02_07090) gmd 1480445..1481590 (-) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -
  QAP02_RS07095 (QAP02_07095) - 1481604..1483016 (-) 1413 WP_286463749.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP02_RS07100 (QAP02_07100) comB10 1483086..1484216 (-) 1131 WP_286463752.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP02_RS07105 (QAP02_07105) comB9 1484209..1485180 (-) 972 WP_286463754.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP02_RS07110 (QAP02_07110) comB8 1485180..1485923 (-) 744 WP_140578636.1 virB8 family protein Machinery gene
  QAP02_RS07115 (QAP02_07115) comB7 1485920..1486033 (-) 114 WP_286463761.1 comB7 lipoprotein Machinery gene
  QAP02_RS07120 (QAP02_07120) comB6 1486049..1487104 (-) 1056 WP_286464815.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP02_RS07125 (QAP02_07125) - 1487112..1488107 (-) 996 WP_286464816.1 PDZ domain-containing protein -
  QAP02_RS07130 (QAP02_07130) - 1488107..1488409 (-) 303 WP_181229633.1 YbaB/EbfC family nucleoid-associated protein -
  QAP02_RS07135 (QAP02_07135) panD 1488412..1488765 (-) 354 WP_286463764.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28696.97 Da        Isoelectric Point: 8.9546

>NTDB_id=817324 QAP02_RS07110 WP_140578636.1 1485180..1485923(-) (comB8) [Helicobacter pylori strain BS21]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISGNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=817324 QAP02_RS07110 WP_140578636.1 1485180..1485923(-) (comB8) [Helicobacter pylori strain BS21]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTGGTAA
TGAAGCGTTGGCTCGTTCGCTTATAGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCCGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968