Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GEOBRER4_RS19610 Genome accession   NZ_AP023213
Coordinates   4380509..4380949 (+) Length   146 a.a.
NCBI ID   WP_185243645.1    Uniprot ID   -
Organism   Citrifermentans bremense strain R4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4375509..4385949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOBRER4_RS19590 (GEOBRER4_38570) - 4377162..4378838 (-) 1677 WP_185243643.1 ribonuclease J -
  GEOBRER4_RS19595 (GEOBRER4_38580) - 4378912..4379313 (-) 402 WP_185243644.1 hypothetical protein -
  GEOBRER4_RS19600 (GEOBRER4_38590) - 4379348..4379530 (-) 183 WP_085814560.1 hypothetical protein -
  GEOBRER4_RS19605 (GEOBRER4_38600) - 4379531..4380226 (-) 696 WP_085814558.1 lysophospholipid acyltransferase family protein -
  GEOBRER4_RS19610 (GEOBRER4_38610) ssb 4380509..4380949 (+) 441 WP_185243645.1 single-stranded DNA-binding protein Machinery gene
  GEOBRER4_RS19615 (GEOBRER4_38620) tcmP 4381160..4382350 (+) 1191 WP_185243646.1 three-Cys-motif partner protein TcmP -
  GEOBRER4_RS19620 (GEOBRER4_38630) - 4382329..4383069 (+) 741 WP_185243647.1 DUF5131 family protein -
  GEOBRER4_RS19625 (GEOBRER4_38640) - 4383399..4384007 (-) 609 WP_185243648.1 YajG family lipoprotein -
  GEOBRER4_RS19630 (GEOBRER4_38650) - 4384516..4385073 (+) 558 WP_185243649.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16271.12 Da        Isoelectric Point: 5.3430

>NTDB_id=81685 GEOBRER4_RS19610 WP_185243645.1 4380509..4380949(+) (ssb) [Citrifermentans bremense strain R4]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSLATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYVEGR
LQTRKWTDKEGKDRYTTEIVGEKMQMLSSKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=81685 GEOBRER4_RS19610 WP_185243645.1 4380509..4380949(+) (ssb) [Citrifermentans bremense strain R4]
ATGGCCAGTCTGAACAAGGTGATGCTCATCGGGAACCTGGGCAAAGATCCCGAGGTGCGCTACACCGCCGGCGGCACCGC
CGTAGCATCCTTCTCCCTCGCCACCACCGAGAAGTTCAAGGGCAAGGACGGCAACTGGGAAGAGAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAATACCTTTCCAAGGGGAAGACCGTATATGTCGAAGGGCGT
CTGCAGACCCGCAAGTGGACCGACAAAGAAGGGAAAGATCGCTACACCACCGAGATCGTCGGCGAGAAGATGCAGATGCT
GTCCAGCAAAGGCGAAGGTGGCGGCGGTGGTCAGCGTCAGTCCAGGCCGCAGCAGGATTACAACCAGGGCGGCGGTTACG
AAGAGCCGGTATTCAACCCGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.045

100

0.589
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.548
  ssb Neisseria meningitidis MC58

43.931

100

0.521
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.521

Multiple sequence alignment