Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R0792_RS18095 Genome accession   NZ_CP136842
Coordinates   3930289..3930786 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa PA14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3925289..3935786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0792_RS18075 pchD 3926073..3927716 (+) 1644 WP_003137468.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  R0792_RS18080 pchC 3927713..3928468 (+) 756 WP_003137465.1 pyochelin biosynthesis editing thioesterase PchC -
  R0792_RS18085 pchB 3928468..3928773 (+) 306 WP_003137464.1 isochorismate lyase PchB -
  R0792_RS18090 pchA 3928770..3930200 (+) 1431 WP_003129314.1 isochorismate synthase PchA -
  R0792_RS18095 ssb 3930289..3930786 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  R0792_RS18100 - 3930803..3932191 (-) 1389 WP_003103910.1 MFS transporter -
  R0792_RS18105 uvrA 3932405..3935242 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  R0792_RS18110 bfr 3935314..3935778 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=815918 R0792_RS18095 WP_003114685.1 3930289..3930786(-) (ssb) [Pseudomonas aeruginosa PA14]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=815918 R0792_RS18095 WP_003114685.1 3930289..3930786(-) (ssb) [Pseudomonas aeruginosa PA14]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515