Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R0792_RS00560 Genome accession   NZ_CP136842
Coordinates   108088..109146 (+) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa PA14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103088..114146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0792_RS00535 - 103348..103818 (-) 471 WP_003086103.1 Dps family protein -
  R0792_RS00540 aspS 104258..106033 (+) 1776 WP_003123218.1 aspartate--tRNA ligase -
  R0792_RS00545 - 106100..106846 (+) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R0792_RS00550 ruvC 106931..107455 (+) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  R0792_RS00555 ruvA 107472..108077 (+) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  R0792_RS00560 ruvB 108088..109146 (+) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R0792_RS00565 ybgC 109199..109645 (+) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  R0792_RS00570 tolQ 109647..110342 (+) 696 WP_003086125.1 protein TolQ -
  R0792_RS00575 tolR 110365..110805 (+) 441 WP_003086126.1 protein TolR -
  R0792_RS00580 tolA 110808..111851 (+) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  R0792_RS00585 tolB 111848..113146 (+) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  R0792_RS00590 pal 113199..113705 (+) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=815880 R0792_RS00560 WP_003086123.1 108088..109146(+) (ruvB) [Pseudomonas aeruginosa PA14]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=815880 R0792_RS00560 WP_003086123.1 108088..109146(+) (ruvB) [Pseudomonas aeruginosa PA14]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAACTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGTTGTATCCGGCCATGGAAGATT
TCCAACTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACGCTGGTCGGC
GCGACCACCCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTATTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491