Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1T10_RS05120 Genome accession   NZ_CP136807
Coordinates   1028019..1028543 (+) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis NMB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1023019..1033543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS05095 - 1024263..1024754 (+) 492 WP_002224276.1 transposase -
  R1T10_RS05100 - 1024791..1025212 (+) 422 Protein_967 transposase -
  R1T10_RS05105 - 1025600..1025839 (-) 240 WP_173026321.1 hypothetical protein -
  R1T10_RS05110 - 1025899..1026522 (+) 624 WP_002212974.1 lytic transglycosylase domain-containing protein -
  R1T10_RS05115 - 1026633..1028015 (+) 1383 WP_002225104.1 MFS transporter -
  R1T10_RS05120 ssb 1028019..1028543 (+) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  R1T10_RS05125 - 1029068..1029991 (+) 924 WP_002219053.1 DMT family transporter -
  R1T10_RS05130 fumC 1030056..1031444 (-) 1389 WP_002236540.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=815840 R1T10_RS05120 WP_002212976.1 1028019..1028543(+) (ssb) [Neisseria meningitidis NMB]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=815840 R1T10_RS05120 WP_002212976.1 1028019..1028543(+) (ssb) [Neisseria meningitidis NMB]
ATGTCATTGAACAAAGTCATCCTCATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
TTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACCATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46