Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0M55_RS03565 Genome accession   NZ_CP136800
Coordinates   736406..736903 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain A6-17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 731406..741903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M55_RS03550 (M0M55_03550) bfr 731414..731878 (+) 465 WP_003093668.1 bacterioferritin -
  M0M55_RS03555 (M0M55_03555) uvrA 731950..734787 (-) 2838 WP_058170667.1 excinuclease ABC subunit UvrA Machinery gene
  M0M55_RS03560 (M0M55_03560) - 735001..736389 (+) 1389 WP_009316331.1 MFS transporter -
  M0M55_RS03565 (M0M55_03565) ssb 736406..736903 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M0M55_RS03570 (M0M55_03570) pchA 736990..738420 (-) 1431 WP_108084424.1 isochorismate synthase PchA -
  M0M55_RS03575 (M0M55_03575) pchB 738417..738722 (-) 306 WP_031285628.1 isochorismate lyase PchB -
  M0M55_RS03580 (M0M55_03580) pchC 738722..739477 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  M0M55_RS03585 (M0M55_03585) pchD 739474..741117 (-) 1644 WP_108084425.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=815724 M0M55_RS03565 WP_003114685.1 736406..736903(+) (ssb) [Pseudomonas aeruginosa strain A6-17]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=815724 M0M55_RS03565 WP_003114685.1 736406..736903(+) (ssb) [Pseudomonas aeruginosa strain A6-17]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATTAACGG
CAACATGCAACTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515