Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RYQ61_RS06370 Genome accession   NZ_CP136799
Coordinates   1229900..1230565 (+) Length   221 a.a.
NCBI ID   WP_102567780.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224900..1235565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06355 (RYQ61_06355) cysK 1226882..1227811 (-) 930 WP_102567781.1 cysteine synthase A -
  RYQ61_RS06360 (RYQ61_06360) - 1227910..1228545 (-) 636 WP_048784930.1 YigZ family protein -
  RYQ61_RS06365 (RYQ61_06365) comFA/cflA 1228602..1229903 (+) 1302 WP_048784928.1 DEAD/DEAH box helicase Machinery gene
  RYQ61_RS06370 (RYQ61_06370) comFC/cflB 1229900..1230565 (+) 666 WP_102567780.1 ComF family protein Machinery gene
  RYQ61_RS06375 (RYQ61_06375) hpf 1230644..1231186 (+) 543 WP_003073626.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RYQ61_RS06380 (RYQ61_06380) rsmD 1231385..1231924 (+) 540 WP_048784924.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RYQ61_RS06385 (RYQ61_06385) coaD 1231914..1232411 (+) 498 WP_003078294.1 pantetheine-phosphate adenylyltransferase -
  RYQ61_RS06390 (RYQ61_06390) sepM 1232392..1233447 (+) 1056 WP_102567779.1 SepM family pheromone-processing serine protease Regulator
  RYQ61_RS06395 (RYQ61_06395) - 1233729..1234292 (+) 564 WP_003073618.1 YutD family protein -
  RYQ61_RS06400 (RYQ61_06400) rlmN 1234326..1235408 (+) 1083 WP_003073615.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25396.37 Da        Isoelectric Point: 7.9117

>NTDB_id=815679 RYQ61_RS06370 WP_102567780.1 1229900..1230565(+) (comFC/cflB) [Streptococcus intermedius strain XH2169]
MNVCVLCDNFLGEKLTFCDLLSLTKPKIRACDACFDKFQRISEQHCPKCYRDGTSEICVDCQVWLGKGKEVSHKSCFVYN
EAMKDYFSQYKFQGDYALYSVFTEILQKELKAYSDYTLVPIPVSSEKYQKRGFNQVTALLEGTKLPFREILEKYDTIAQS
SKTRKERLQSQQCFKLKDSVQPPTKVLLLDDIYTTGSTLQLAKEILVEAGVKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=815679 RYQ61_RS06370 WP_102567780.1 1229900..1230565(+) (comFC/cflB) [Streptococcus intermedius strain XH2169]
ATGAATGTATGTGTTTTATGTGACAATTTTCTTGGCGAAAAACTGACATTTTGTGATTTATTGTCCTTGACTAAGCCAAA
AATAAGGGCTTGTGATGCCTGCTTTGACAAATTTCAGCGTATTTCAGAGCAGCATTGTCCTAAGTGTTATCGGGATGGAA
CAAGTGAAATCTGTGTAGATTGCCAAGTATGGCTGGGAAAAGGAAAAGAAGTTTCTCATAAAAGTTGTTTTGTTTATAAT
GAAGCTATGAAAGACTACTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTATTCTGTATTTACAGAGATTTTGCA
AAAAGAATTAAAAGCCTATAGCGATTATACACTTGTTCCTATTCCTGTAAGTAGTGAAAAGTACCAGAAGCGAGGCTTCA
ACCAAGTAACAGCTCTCCTTGAGGGGACAAAGTTGCCGTTTAGAGAAATTTTAGAAAAGTATGATACGATTGCTCAATCA
AGTAAGACAAGAAAGGAGCGTTTGCAAAGTCAGCAGTGTTTTAAACTGAAAGACAGTGTTCAGCCTCCGACAAAAGTTCT
TTTGCTAGATGACATTTATACGACTGGCTCAACCCTACAGTTAGCAAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTATGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

98.643

0.462
  comFC/cflB Streptococcus mitis NCTC 12261

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.33

98.643

0.457