Detailed information NTG0815659

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RYQ61_RS04455
• Genome accession: NZ_CP136799
• Coordinates: 839340..840338 (+)
• Length: 332 a.a.
• NCBI ID: WP_102568172.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain XH2169
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 834340..845338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RYQ61_RS04435 (RYQ61_04435)	-	834799..835968 (+)	1170	WP_096362357.1	SIS domain-containing protein	-
RYQ61_RS04440 (RYQ61_04440)	lacD	835979..836980 (+)	1002	WP_102568175.1	tagatose-bisphosphate aldolase	-
RYQ61_RS04445 (RYQ61_04445)	-	837023..838069 (+)	1047	WP_102568174.1	aldose epimerase family protein	-
RYQ61_RS04450 (RYQ61_04450)	-	838171..838932 (-)	762	WP_102568173.1	N-acetylmuramoyl-L-alanine amidase family protein	-
RYQ61_RS04455 (RYQ61_04455)	ruvB	839340..840338 (+)	999	WP_102568172.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RYQ61_RS04460 (RYQ61_04460)	-	840344..840911 (+)	568	Protein_838	nucleotidyltransferase family protein	-
RYQ61_RS04465 (RYQ61_04465)	-	841231..843669 (+)	2439	WP_102568171.1	Sgo0707 family adhesin	-
RYQ61_RS04470 (RYQ61_04470)	-	843723..845186 (+)	1464	WP_102568170.1	SpaH/EbpB family LPXTG-anchored major pilin	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37383.71 Da
• Isoelectric Point: 4.3629

>NTDB_id=815659 RYQ61_RS04455 WP_102568172.1 839340..840338(+) (ruvB) [Streptococcus intermedius strain XH2169]
MNRMLDNELMGDEELVERTLRPQYLQEYIGQNKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAEADLTEIVERTAEIFEMDITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
DQITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRAGRVATRK
TYEHLGYEYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=815659 RYQ61_RS04455 WP_102568172.1 839340..840338(+) (ruvB) [Streptococcus intermedius strain XH2169]
ATGAATAGAATGTTAGATAATGAATTGATGGGAGACGAAGAGCTCGTTGAGCGCACATTGCGTCCCCAGTACTTACAAGA
ATATATAGGCCAAAATAAGGTTAAAAATCAACTGAAGATTTTTATTGAGGCAGCAAAGTTGCGAGACGAGGCATTAGATC
ATACCCTACTTTTCGGACCTCCGGGATTGGGTAAAACGACGATGGCTTTTGTGATCGCTAATGAGCTAGGAGTCAATCTC
AAACAGACTTCGGGGCCTGTGATTGAGAAATCGGGCGATTTGGTAGCGATCTTGAATGATCTGGAGCCAGGAGATGTCCT
TTTTATCGATGAAATTCATCGCTTACCCATGTCTGTTGAAGAAGTGCTTTACAGTGCTATGGAAGATTTTTACATTGATA
TTATGATTGGTTCTGGTGAAACTAGTCGCAGTGTTCATTTGGATTTACCACCTTTTACTTTGATTGGGGCAACGACCCGA
GCTGGTATGTTGTCAAATCCCTTGCGGGCTCGTTTTGGCATTACTGGTCACATGGAATATTATGCAGAAGCAGATTTGAC
CGAGATTGTGGAGCGAACGGCAGAAATCTTTGAAATGGACATCACTCATGAAGCAGCTGAAGAATTAGCACTGCGTAGCC
GGGGCACGCCTCGGATTGCCAATCGACTTCTTAAACGCGTACGAGATTTTGCTCAGATTATGGGTGACGGGCTGATTGAT
GACCAAATTACTGATCAAGCCCTGACGATGCTTGATGTGGATCAAGAAGGCTTAGACTATGTGGATCAGAAGATTCTTAA
AACTATGATTGAGGTGTATGGAGGCGGACCTGTTGGTTTAGGAACCTTGTCTGTCAATATTGCAGAAGAGCAAGAAACGG
TGGAAGATATGTATGAGCCATACTTGATTCAGAAAGGCTTTGTTATGCGAACTCGAGCAGGGCGTGTAGCAACGCGTAAA
ACTTATGAGCATTTGGGTTATGAATACTTGGAAAAGTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.361	100	0.904
ruvB	Streptococcus pneumoniae D39	90.361	100	0.904
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.509	98.193	0.584
ruvB	Helicobacter pylori 26695	52.012	97.289	0.506
ruvB	Synechocystis sp. PCC 6803	50	93.373	0.467