Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R1Y80_RS05155 Genome accession   NZ_CP136798
Coordinates   1174003..1175088 (-) Length   361 a.a.
NCBI ID   WP_006123221.1    Uniprot ID   A0A5D4J9V0
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1169003..1180088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS05135 (R1Y80_05120) - 1169758..1170309 (-) 552 WP_093438735.1 adenine phosphoribosyltransferase -
  R1Y80_RS05140 (R1Y80_05125) secF 1170313..1171395 (-) 1083 WP_093438737.1 protein translocase subunit SecF -
  R1Y80_RS05145 (R1Y80_05130) secD 1171397..1173202 (-) 1806 WP_354596505.1 protein translocase subunit SecD -
  R1Y80_RS05150 (R1Y80_05135) yajC 1173353..1173835 (-) 483 WP_032768128.1 preprotein translocase subunit YajC -
  R1Y80_RS05155 (R1Y80_05140) ruvB 1174003..1175088 (-) 1086 WP_006123221.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R1Y80_RS05160 (R1Y80_05145) ruvA 1175118..1175744 (-) 627 WP_032780883.1 Holliday junction branch migration protein RuvA -
  R1Y80_RS05165 (R1Y80_05150) ruvC 1175924..1176508 (-) 585 Protein_1029 crossover junction endodeoxyribonuclease RuvC -
  R1Y80_RS05170 (R1Y80_05155) - 1176670..1177422 (-) 753 WP_006123225.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R1Y80_RS05175 (R1Y80_05160) pdxT 1177484..1178077 (-) 594 WP_030712536.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  R1Y80_RS05180 (R1Y80_05165) pdxS 1178084..1179004 (-) 921 WP_003970325.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  R1Y80_RS05185 (R1Y80_05170) - 1179126..1179674 (-) 549 WP_006123227.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38614.08 Da        Isoelectric Point: 4.7850

>NTDB_id=815536 R1Y80_RS05155 WP_006123221.1 1174003..1175088(-) (ruvB) [Streptomyces sp. JL1001]
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSARLLDVGIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGTIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=815536 R1Y80_RS05155 WP_006123221.1 1174003..1175088(-) (ruvB) [Streptomyces sp. JL1001]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCGACCGGTCCGGTCTTCGACGACCGGCTGGTCGACGCCGACGC
GGACGGCGAGGACACCGCGGTCGAGGCGGCGCTGCGCCCCAAGGACCTGGACGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCCGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCGGCCGAGATGAACGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCGGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGACCCGGTGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTGGTCCACCGCTCCGCCCGCC
TGCTGGACGTCGGGATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGTTCCCGGGGCACCCCCCGTATCGCCAACCGG
CTGCTCCGCCGCGTCCGCGACTACGCCCAGGTCAAGGCGGAGGGAACGATCGACCGGGAGATCGCCGCGGCGGCCCTCAA
GGTGTACGAGGTCGACGCCCGCGGCCTCGACCGGCTGGACCGTGCCGTCCTCGGCGCCCTGCTGAAGCTGTTCGGCGGCG
GCCCCGTCGGCCTGTCCACCCTGGCCGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACCCCGCGCGGCCGGGTCGCCACCCCCGCGGCCTGGGCCCATCTGGGGCTGGTACC
GCCGCAGCACGGAGCAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

RuvB AAA lid domain (AAA_lid_4)

(199-272)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4J9V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.853

92.244

0.488
  ruvB Streptococcus pneumoniae TIGR4

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae R6

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae D39

53.086

89.751

0.476
  ruvB Synechocystis sp. PCC 6803

53.185

86.981

0.463
  ruvB Helicobacter pylori 26695

50.314

88.089

0.443