Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | M2042_RS14940 | Genome accession | NZ_AP023187 |
| Coordinates | 3105311..3105904 (-) | Length | 197 a.a. |
| NCBI ID | WP_064354357.1 | Uniprot ID | A0AAW7A2J1 |
| Organism | Vibrio alginolyticus strain HLBS-07 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3100311..3110904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2042_RS14920 (HLBS07_28490) | aroB | 3101197..3102297 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| M2042_RS14925 (HLBS07_28500) | aroK | 3102329..3102847 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| M2042_RS14930 (HLBS07_28510) | pilQ | 3103035..3104780 (-) | 1746 | WP_248525351.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| M2042_RS14935 (HLBS07_28520) | pilP | 3104806..3105321 (-) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| M2042_RS14940 (HLBS07_28530) | pilO | 3105311..3105904 (-) | 594 | WP_064354357.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| M2042_RS14945 (HLBS07_28540) | pilN | 3105897..3106472 (-) | 576 | WP_005381323.1 | PilN domain-containing protein | Machinery gene |
| M2042_RS14950 (HLBS07_28550) | pilM | 3106456..3107472 (-) | 1017 | WP_005381324.1 | type IV pilus assembly protein PilM | Machinery gene |
| M2042_RS14955 (HLBS07_28560) | - | 3107617..3110178 (+) | 2562 | WP_025768081.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23029.56 Da Isoelectric Point: 5.0885
>NTDB_id=81552 M2042_RS14940 WP_064354357.1 3105311..3105904(-) (pilO) [Vibrio alginolyticus strain HLBS-07]
MVDWQDLEIDEMAEWPLLPQIIVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIIVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=81552 M2042_RS14940 WP_064354357.1 3105311..3105904(-) (pilO) [Vibrio alginolyticus strain HLBS-07]
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTATAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTATAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
86.842 |
96.447 |
0.838 |
| pilO | Vibrio cholerae strain A1552 |
70.157 |
96.954 |
0.68 |