Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA414_RS08030 Genome accession   NZ_CP122438
Coordinates   1621187..1621702 (+) Length   171 a.a.
NCBI ID   WP_006470425.1    Uniprot ID   -
Organism   Brucella intermedia strain ZL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1616187..1626702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA414_RS08010 (QA414_08010) - 1616193..1616513 (+) 321 WP_022568860.1 hypothetical protein -
  QA414_RS08015 (QA414_08015) - 1616556..1617137 (-) 582 WP_279718358.1 hypothetical protein -
  QA414_RS08020 (QA414_08020) uvrA 1617273..1620197 (-) 2925 WP_279718359.1 excinuclease ABC subunit UvrA -
  QA414_RS08025 (QA414_08025) - 1620313..1620524 (-) 212 Protein_1577 hypothetical protein -
  QA414_RS08030 (QA414_08030) ssb 1621187..1621702 (+) 516 WP_006470425.1 single-stranded DNA-binding protein Machinery gene
  QA414_RS08035 (QA414_08035) arsH 1621990..1622703 (-) 714 WP_279718360.1 arsenical resistance protein ArsH -
  QA414_RS08040 (QA414_08040) arsC 1622700..1623110 (-) 411 WP_279718361.1 arsenate reductase (glutaredoxin) -
  QA414_RS08045 (QA414_08045) arsB 1623107..1624168 (-) 1062 WP_279718362.1 ACR3 family arsenite efflux transporter -
  QA414_RS08050 (QA414_08050) - 1624313..1624672 (-) 360 WP_021585114.1 metalloregulator ArsR/SmtB family transcription factor -
  QA414_RS08055 (QA414_08055) phnF 1624825..1625577 (-) 753 WP_176056048.1 phosphonate metabolism transcriptional regulator PhnF -
  QA414_RS08060 (QA414_08060) phnG 1625690..1626205 (+) 516 WP_081255561.1 phosphonate C-P lyase system protein PhnG -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18436.17 Da        Isoelectric Point: 5.3476

>NTDB_id=815492 QA414_RS08030 WP_006470425.1 1621187..1621702(+) (ssb) [Brucella intermedia strain ZL]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGGSGGG
FSRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=815492 QA414_RS08030 WP_006470425.1 1621187..1621702(+) (ssb) [Brucella intermedia strain ZL]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAACCTTGGTGCCGATCCGGAAATTCGTCGTCTGAACTCGGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCTGAAAGCTGGCGGGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTCGTCATTTTCAACGAGAACCTTGCGAAGGTCGCGGAGCAATATCTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAGTCGTGCTGCAGAAGTT
CCGCGGCGAGTTGCAAATGCTCGACAGCCGTGGCGAAGGCGGCGGTGAGGGCCGTTCGTTCGGTGGTGGCGGCAATCGCA
ACCAGATGTCGGATTATTCCGGTGGCGGCGGCGACTTCGGTTCGTCCGGCCCGTCTTCGGGTGGCGGCAGCGGCGGCGGC
TTCTCCCGCGACCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.532
  ssb Vibrio cholerae strain A1552

63.559

69.006

0.439
  ssb Neisseria meningitidis MC58

37.222

100

0.392
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.386