Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M2042_RS14695 | Genome accession | NZ_AP023187 |
| Coordinates | 3048666..3049205 (-) | Length | 179 a.a. |
| NCBI ID | WP_005387798.1 | Uniprot ID | A0A2I3CBE0 |
| Organism | Vibrio alginolyticus strain HLBS-07 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3043666..3054205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2042_RS14675 (HLBS07_28140) | - | 3043985..3044317 (-) | 333 | WP_005381196.1 | hypothetical protein | - |
| M2042_RS14680 (HLBS07_28150) | gspM | 3044310..3044960 (-) | 651 | WP_005381197.1 | type II secretion system protein GspM | - |
| M2042_RS14685 (HLBS07_28160) | - | 3044957..3046402 (-) | 1446 | WP_005387799.1 | hypothetical protein | - |
| M2042_RS14690 (HLBS07_28170) | csrD | 3046414..3048423 (-) | 2010 | WP_005381201.1 | RNase E specificity factor CsrD | - |
| M2042_RS14695 (HLBS07_28180) | ssb | 3048666..3049205 (-) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| M2042_RS14700 (HLBS07_28190) | - | 3049483..3050126 (+) | 644 | Protein_2750 | LuxR C-terminal-related transcriptional regulator | - |
| M2042_RS14705 (HLBS07_28200) | galU | 3050286..3051158 (+) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| M2042_RS14710 (HLBS07_28210) | uvrA | 3051308..3054130 (+) | 2823 | WP_054575329.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19902.97 Da Isoelectric Point: 4.9164
>NTDB_id=81549 M2042_RS14695 WP_005387798.1 3048666..3049205(-) (ssb) [Vibrio alginolyticus strain HLBS-07]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=81549 M2042_RS14695 WP_005387798.1 3048666..3049205(-) (ssb) [Vibrio alginolyticus strain HLBS-07]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.781 |
100 |
0.816 |
| ssb | Glaesserella parasuis strain SC1401 |
54.922 |
100 |
0.592 |
| ssb | Neisseria meningitidis MC58 |
45.405 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.369 |
100 |
0.464 |