Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC826_RS30575 Genome accession   NZ_CP122407
Coordinates   6627602..6628102 (+) Length   166 a.a.
NCBI ID   WP_279763773.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6622602..6633102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS30570 (QC826_30570) uvrA 6624390..6627235 (-) 2846 Protein_6043 excinuclease ABC subunit UvrA -
  QC826_RS30575 (QC826_30575) ssb 6627602..6628102 (+) 501 WP_279763773.1 single-stranded DNA-binding protein Machinery gene
  QC826_RS30580 (QC826_30580) abiEi 6628290..6628829 (+) 540 WP_279763774.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  QC826_RS30585 (QC826_30585) - 6628822..6629736 (+) 915 WP_279763775.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  QC826_RS30590 (QC826_30590) - 6629968..6631014 (+) 1047 WP_279763776.1 PHA-depolymerase-like protein -
  QC826_RS30595 (QC826_30595) - 6631126..6632130 (-) 1005 WP_279763777.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18056.30 Da        Isoelectric Point: 5.9417

>NTDB_id=815487 QC826_RS30575 WP_279763773.1 6627602..6628102(+) (ssb) [Rugamonas sp. DEMB1]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRQGMGGGDGMDDGGGYDAPAPSRPAPPPRPQQQAPAPRPAPKPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=815487 QC826_RS30575 WP_279763773.1 6627602..6628102(+) (ssb) [Rugamonas sp. DEMB1]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGCGATCCGGAAATTCGCTACATGCCTAGCGGTGACGC
GATCGCCAACATCGCGGTGGCGACCTCGTACAAGTCGAAAGACCGCAACACCGGCGAGCAGAAAGAGCTCACCGAATGGC
ACCGCATCTCCTTCTTCGGCCGCCTGGCTGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCCTCGGTCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTACACCGACAAAGACGGCGTCGAGAAATACGCGACCGACATCATCGCCGAGCAGATGCAAAT
GCTGGGTGGCCGTCAAGGCATGGGTGGTGGCGACGGCATGGACGACGGCGGCGGTTACGACGCCCCGGCGCCTAGCCGTC
CGGCCCCGCCGCCGCGTCCGCAGCAGCAAGCCCCGGCCCCGCGCCCAGCGCCGAAGCCGGCGCCGAACTTCTCGGACATG
GATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.934

100

0.566
  ssb Neisseria gonorrhoeae MS11

52.874

100

0.554
  ssb Neisseria meningitidis MC58

52.299

100

0.548
  ssb Glaesserella parasuis strain SC1401

48.37

100

0.536