Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   R0492_RS14800 Genome accession   NZ_CP136649
Coordinates   2830021..2830695 (-) Length   224 a.a.
NCBI ID   WP_003184045.1    Uniprot ID   Q65GL3
Organism   Bacillus licheniformis strain NXU98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2825021..2835695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS14765 - 2825129..2825560 (+) 432 WP_369878943.1 SRPBCC domain-containing protein -
  R0492_RS14770 - 2825560..2825880 (+) 321 WP_003184034.1 helix-turn-helix transcriptional regulator -
  R0492_RS14775 minD 2825925..2826731 (-) 807 WP_003184035.1 septum site-determining protein MinD -
  R0492_RS14780 minC 2826734..2827414 (-) 681 WP_011198163.1 septum site-determining protein MinC -
  R0492_RS14785 mreD 2827469..2827987 (-) 519 WP_003184039.1 rod shape-determining protein MreD -
  R0492_RS14790 mreC 2827984..2828892 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  R0492_RS14795 - 2828923..2829933 (-) 1011 WP_003184042.1 rod shape-determining protein -
  R0492_RS14800 ysxA/radC 2830021..2830695 (-) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  R0492_RS14805 - 2830750..2831322 (-) 573 WP_003184048.1 nucleoside triphosphate pyrophosphatase -
  R0492_RS14810 - 2831476..2832507 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  R0492_RS14815 comC 2832711..2833460 (-) 750 WP_003184052.1 A24 family peptidase Machinery gene
  R0492_RS14820 - 2833603..2834901 (-) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25239.11 Da        Isoelectric Point: 8.3107

>NTDB_id=815408 R0492_RS14800 WP_003184045.1 2830021..2830695(-) (ysxA/radC) [Bacillus licheniformis strain NXU98]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=815408 R0492_RS14800 WP_003184045.1 2830021..2830695(-) (ysxA/radC) [Bacillus licheniformis strain NXU98]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

80.804

100

0.808
  radC Streptococcus pneumoniae TIGR4

46.667

93.75

0.438
  radC Streptococcus pneumoniae R6

46.19

93.75

0.433
  radC Streptococcus pneumoniae D39

46.19

93.75

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

44.762

93.75

0.42