Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8596_RS23745 Genome accession   NZ_CP122397
Coordinates   4611191..4611712 (-) Length   173 a.a.
NCBI ID   WP_254652726.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4606191..4616712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS23730 (P8596_23730) - 4606713..4607636 (-) 924 WP_279725454.1 YybS family protein -
  P8596_RS23735 (P8596_23735) - 4607939..4609999 (-) 2061 WP_279725455.1 methyl-accepting chemotaxis protein -
  P8596_RS23740 (P8596_23740) rpsR 4610914..4611150 (-) 237 WP_034764780.1 30S ribosomal protein S18 -
  P8596_RS23745 (P8596_23745) ssbA 4611191..4611712 (-) 522 WP_254652726.1 single-stranded DNA-binding protein Machinery gene
  P8596_RS23750 (P8596_23750) rpsF 4611792..4612079 (-) 288 WP_034764776.1 30S ribosomal protein S6 -
  P8596_RS23755 (P8596_23755) ychF 4612245..4613345 (-) 1101 WP_060674606.1 redox-regulated ATPase YchF -
  P8596_RS23760 (P8596_23760) - 4613598..4613798 (-) 201 WP_034764770.1 DUF951 domain-containing protein -
  P8596_RS23765 (P8596_23765) - 4613812..4614738 (-) 927 WP_224522417.1 mechanosensitive ion channel family protein -
  P8596_RS23770 (P8596_23770) yyaC 4614995..4615615 (+) 621 WP_224522416.1 spore protease YyaC -
  P8596_RS23775 (P8596_23775) - 4615658..4616371 (-) 714 WP_254652727.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19147.88 Da        Isoelectric Point: 4.8013

>NTDB_id=815373 P8596_RS23745 WP_254652726.1 4611191..4611712(-) (ssbA) [Rossellomorea sp. DA94]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGDRGGSPGYSGGGQRDQGQGNPYSQNQNQQRNNNNNNNYTRVDEDPFAND
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=815373 P8596_RS23745 WP_254652726.1 4611191..4611712(-) (ssbA) [Rossellomorea sp. DA94]
ATGATGAACCGAGTTGTATTAGTAGGGCGTTTAACCAAAGACCCTGAATTAAAATATACTCCAAGTGGAGTGGCTGTGGC
TTCGTTTACACTGGCTGTCAATCGTAGTTTTACGAATCAATCAGGAGAACGGGAAGCAGATTTTATTAACTGTGTTGTAT
GGCGTCGCCCTGCAGAGAATGTAGCAAACTTTCTTAAAAAAGGCAGCTTAGCTGGCGTTGACGGTCGCATTCAAACACGT
AATTTCGAAGGACAAGATGGACGTCGTGTGTTTATGACGGAAGTTGTAGCAGAAAGCGTTCAGTTCTTGGAACCGCGTAG
TGCGAATCAAGGCGATCGTGGAGGAAGTCCGGGCTATTCGGGTGGAGGTCAGCGTGACCAAGGCCAAGGAAATCCGTATA
GTCAGAATCAGAATCAACAACGCAACAACAATAATAACAACAACTATACACGTGTAGATGAGGATCCATTCGCTAATGAC
GGTCAGCCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.156

100

0.705
  ssb Latilactobacillus sakei subsp. sakei 23K

56.425

100

0.584
  ssb Glaesserella parasuis strain SC1401

36.111

100

0.376
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.272

0.37