Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R0513_RS07015 Genome accession   NZ_CP136638
Coordinates   1340738..1341745 (+) Length   335 a.a.
NCBI ID   WP_041160220.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S2-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335738..1346745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS07000 (R0513_07000) - 1337393..1339671 (-) 2279 Protein_1362 autotransporter outer membrane beta-barrel domain-containing protein -
  R0513_RS07010 (R0513_07010) - 1340237..1340647 (-) 411 WP_002783915.1 hypothetical protein -
  R0513_RS07015 (R0513_07015) ruvB 1340738..1341745 (+) 1008 WP_041160220.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R0513_RS07020 (R0513_07020) amaA 1341749..1342792 (+) 1044 WP_002859651.1 AI-2E family transporter -
  R0513_RS07025 (R0513_07025) fumC 1342822..1344213 (-) 1392 WP_041160221.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37323.90 Da        Isoelectric Point: 4.9081

>NTDB_id=815291 R0513_RS07015 WP_041160220.1 1340738..1341745(+) (ruvB) [Campylobacter jejuni strain S2-20]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSVLKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=815291 R0513_RS07015 WP_041160220.1 1340738..1341745(+) (ruvB) [Campylobacter jejuni strain S2-20]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACGGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATTGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGAGCTACAACGCGT
GCAGGTATGCTTAGTAATCCTTTGCGAGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCCCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGAGTGAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCTAAACAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGTTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae R6

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae D39

48.632

98.209

0.478
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475