Detailed information NTG0815142

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RZE83_RS39745
• Genome accession: NZ_CP136588
• Coordinates: 8308392..8309450 (-)
• Length: 352 a.a.
• NCBI ID: WP_038958818.1
• Uniprot ID: A0ABV2S7S2
• Organism: Bradyrhizobium japonicum strain CNPSo 17
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 8303392..8314450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RZE83_RS39730 (RZE83_39720)	-	8303775..8303984 (+)	210	WP_035708418.1	hypothetical protein	-
RZE83_RS39735 (RZE83_39725)	-	8305491..8307194 (+)	1704	WP_035708423.1	recombinase family protein	-
RZE83_RS46150	-	8307167..8307253 (-)	87	Protein_7915	acyl-CoA thioester hydrolase	-
RZE83_RS39740 (RZE83_39730)	-	8307326..8308240 (-)	915	WP_014492330.1	metallophosphoesterase	-
RZE83_RS39745 (RZE83_39735)	ruvB	8308392..8309450 (-)	1059	WP_038958818.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RZE83_RS39750 (RZE83_39740)	ruvA	8309447..8310064 (-)	618	WP_038936752.1	Holliday junction branch migration protein RuvA	-
RZE83_RS39755 (RZE83_39745)	ruvC	8310061..8310588 (-)	528	WP_039156321.1	crossover junction endodeoxyribonuclease RuvC	-
RZE83_RS39760 (RZE83_39750)	-	8310827..8311573 (-)	747	WP_028150892.1	YebC/PmpR family DNA-binding transcriptional regulator	-
RZE83_RS39765 (RZE83_39755)	-	8311777..8313525 (+)	1749	WP_039156319.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 38070.27 Da
• Isoelectric Point: 5.5148

>NTDB_id=815142 RZE83_RS39745 WP_038958818.1 8308392..8309450(-) (ruvB) [Bradyrhizobium japonicum strain CNPSo 17]
MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL
GVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVG
ATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA
ASIDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTPRGRL
LTSHAFRHLGIAEPSRDAAAQFGLFGSDESDD

Nucleotide

• Length: 1059 bp

>NTDB_id=815142 RZE83_RS39745 WP_038958818.1 8308392..8309450(-) (ruvB) [Bradyrhizobium japonicum strain CNPSo 17]
ATGAGCGACCCCAAGGCCAACCGCATGGTCTCGCCCGAGCGCCGCAGCGACGATGTCGGCGACACCGCGCTGCGTCCGCA
ATCGCTGTCCGATTTCGTCGGCCAGCAGCAGGCGCGCAAGAACCTATCGATCTTCATCGAGGCGGCACGCAAGCGCGGCG
AGGCGCTCGATCACGTGCTGTTCGTAGGCCCCCCCGGCCTCGGCAAGACCACGCTGGCGCAGATCGTCGCCAAGGAGCTC
GGCGTCGGCTTTCGCGCCACCTCGGGTCCGGTGATCGCCAAGGCCGGCGATCTCGCCGCACTCCTCACCAACCTCGAAGA
GCGCGACGTGCTCTTCATCGACGAGATCCATCGCCTGAGCCCCGCGGTGGAAGAGGTGCTCTATCCCGCGATGGAGGATT
TTCAGCTCGACCTGATCATCGGCGAGGGCCCGGCGGCACGCTCGGTGAAGATCGAGCTGTCGAAATTCACGCTCGTCGGC
GCCACCACACGCGCTGGCCTCCTCACCAATCCCTTGCGCGATCGCTTCGGCATCCCGGTGCGGCTCAACTTCTATACGAT
CGAGGAGCTGGAAAGCATCGTCACCCGCGGCGCGCGCGTGCTCAATGTCGGCATGAGCGCCGACGGTGCCAACGAGATCG
CGCGCCGAGCCCGCGGCACGCCGCGCATCGCCGGCCGCCTGCTGCGCCGCGTGCGCGATTTCGCCTCCGCCGCCGATGCC
GCCTCGATCGACCGCAAGATCGCCGACCACGCGCTGAGCGCGCTCGAGGTCGACGCCGCCGGCCTCGATGCCATGGACCG
CCGCTACCTCACGACCATCGCGCAGAACTATGGCGGCGGCCCGGTCGGCGTCGAGACGATGGCTGCCGCGCTGTCCGAGC
CGCGCGATGCGATCGAGGACATCATCGAGCCTTATCTGATTCAGTGCGGCTATCTCCAGCGCACCCCGCGCGGCCGCCTG
CTCACCTCGCACGCCTTCCGCCATCTCGGCATCGCCGAGCCCTCGCGCGATGCCGCCGCACAGTTCGGCCTGTTCGGCTC
GGACGAGAGCGACGACTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (24-182)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-329)

• RuvB AAA lid domain (AAA_lid_4) (185-258)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	56.024	94.318	0.528
ruvB	Streptococcus pneumoniae TIGR4	53.231	92.33	0.491
ruvB	Streptococcus pneumoniae R6	54.14	89.205	0.483
ruvB	Streptococcus pneumoniae D39	54.14	89.205	0.483
ruvB	Helicobacter pylori 26695	54.662	88.352	0.483
ruvB	Synechocystis sp. PCC 6803	50.152	93.466	0.469