Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RZV12_RS01660 Genome accession   NZ_CP136552
Coordinates   359783..360319 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O104:H4 strain rpoS_ATGtoATA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 354783..365319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV12_RS01640 aphA 355072..355785 (+) 714 WP_001307512.1 acid phosphatase AphA -
  RZV12_RS01645 yjbQ 355896..356312 (+) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RZV12_RS01650 yjbR 356316..356672 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RZV12_RS01655 uvrA 356707..359529 (-) 2823 WP_000357745.1 excinuclease ABC subunit UvrA Machinery gene
  RZV12_RS01660 ssb 359783..360319 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RZV12_RS01665 yjcB 360418..360699 (-) 282 WP_001295689.1 YjcB family protein -
  RZV12_RS01670 pdeC 361129..362715 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  RZV12_RS01675 soxS 362718..363041 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RZV12_RS01680 soxR 363127..363591 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=815016 RZV12_RS01660 WP_000168305.1 359783..360319(+) (ssb) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=815016 RZV12_RS01660 WP_000168305.1 359783..360319(+) (ssb) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489