Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QA442_RS09395 Genome accession   NZ_CP121861
Coordinates   1793011..1793346 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus stercoris strain Mal05     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788011..1798346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS09345 (QA442_09345) comGC 1788045..1788341 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QA442_RS09350 (QA442_09350) comGD 1788331..1788762 (+) 432 WP_095431686.1 competence type IV pilus minor pilin ComGD Machinery gene
  QA442_RS09355 (QA442_09355) comGE 1788746..1789087 (+) 342 WP_095431685.1 competence type IV pilus minor pilin ComGE Machinery gene
  QA442_RS09360 (QA442_09360) comGF 1789113..1789493 (+) 381 WP_095431684.1 competence type IV pilus minor pilin ComGF Machinery gene
  QA442_RS09365 (QA442_09365) comGG 1789494..1789868 (+) 375 WP_040082643.1 competence type IV pilus minor pilin ComGG Machinery gene
  QA442_RS09370 (QA442_09370) - 1789940..1790119 (+) 180 WP_014480252.1 YqzE family protein -
  QA442_RS09375 (QA442_09375) - 1790160..1790486 (-) 327 WP_014664589.1 YqzG/YhdC family protein -
  QA442_RS09380 (QA442_09380) tapA 1790758..1791513 (+) 756 WP_095431683.1 amyloid fiber anchoring/assembly protein TapA -
  QA442_RS09385 (QA442_09385) - 1791497..1792069 (+) 573 WP_014664587.1 signal peptidase I -
  QA442_RS09390 (QA442_09390) tasA 1792133..1792918 (+) 786 WP_095431682.1 biofilm matrix protein TasA -
  QA442_RS09395 (QA442_09395) sinR 1793011..1793346 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QA442_RS09400 (QA442_09400) sinI 1793380..1793553 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  QA442_RS09405 (QA442_09405) - 1793737..1794531 (-) 795 WP_095431681.1 YqhG family protein -
  QA442_RS09410 (QA442_09410) - 1794552..1796225 (-) 1674 WP_069149860.1 SNF2-related protein -
  QA442_RS09415 (QA442_09415) gcvT 1796667..1797755 (+) 1089 WP_279474201.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=814908 QA442_RS09395 WP_003226345.1 1793011..1793346(-) (sinR) [Bacillus stercoris strain Mal05]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=814908 QA442_RS09395 WP_003226345.1 1793011..1793346(-) (sinR) [Bacillus stercoris strain Mal05]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1