Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RYH83_RS02510 Genome accession   NZ_CP136539
Coordinates   554408..555133 (-) Length   241 a.a.
NCBI ID   WP_023102173.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GOM9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 549408..560133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH83_RS02485 (RYH83_02485) - 549880..550395 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  RYH83_RS02490 (RYH83_02490) rarD 551085..551981 (-) 897 WP_003121788.1 EamA family transporter RarD -
  RYH83_RS02495 (RYH83_02495) - 552184..553158 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  RYH83_RS02500 (RYH83_02500) - 553220..553978 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  RYH83_RS02505 (RYH83_02505) - 554046..554366 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  RYH83_RS02510 (RYH83_02510) comF 554408..555133 (-) 726 WP_023102173.1 ComF family protein Machinery gene
  RYH83_RS02515 (RYH83_02515) - 555272..555565 (-) 294 WP_003113255.1 hypothetical protein -
  RYH83_RS02520 (RYH83_02520) - 555619..556545 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  RYH83_RS02525 (RYH83_02525) - 556663..557421 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  RYH83_RS02530 (RYH83_02530) - 557498..557746 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RYH83_RS02535 (RYH83_02535) - 557757..559133 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RYH83_RS02540 (RYH83_02540) - 559135..560013 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27083.62 Da        Isoelectric Point: 10.8398

>NTDB_id=814905 RYH83_RS02510 WP_023102173.1 554408..555133(-) (comF) [Pseudomonas aeruginosa strain GOM9]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAVWPLGRLLGELLAEHLRQRYAEGLPPPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=814905 RYH83_RS02510 WP_023102173.1 554408..555133(-) (comF) [Pseudomonas aeruginosa strain GOM9]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGTCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCCCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTAGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.5

99.585

0.373
  comFC Legionella pneumophila str. Paris

38.034

97.095

0.369