Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS25_RS09115 Genome accession   NZ_CP121859
Coordinates   1877585..1878172 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain LOID 15995     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1866356..1877420 1877585..1878172 flank 165


Gene organization within MGE regions


Location: 1866356..1878172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS25_RS09065 tetR 1866356..1866991 (-) 636 WP_017780888.1 tetracycline resistance transcriptional repressor TetR -
  QBS25_RS09070 tet(E) 1867072..1868289 (+) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  QBS25_RS09075 - 1868377..1869045 (-) 669 WP_017780890.1 hypothetical protein -
  QBS25_RS09080 - 1869204..1869365 (-) 162 Protein_1699 IS5/IS1182 family transposase -
  QBS25_RS09085 - 1869583..1871745 (-) 2163 WP_025202554.1 AAA family ATPase -
  QBS25_RS09090 - 1871742..1872179 (-) 438 WP_025202555.1 VPA1267 family protein -
  QBS25_RS09095 - 1872179..1872658 (-) 480 WP_049866848.1 hypothetical protein -
  QBS25_RS09100 - 1872646..1874523 (-) 1878 WP_041207315.1 integrase -
  QBS25_RS09105 - 1874533..1876101 (-) 1569 WP_171269322.1 site-specific integrase -
  QBS25_RS09110 - 1876098..1877420 (-) 1323 WP_041207317.1 site-specific integrase -
  QBS25_RS09115 ssb 1877585..1878172 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814855 QBS25_RS09115 WP_005340181.1 1877585..1878172(-) (ssb) [Aeromonas veronii strain LOID 15995]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814855 QBS25_RS09115 WP_005340181.1 1877585..1878172(-) (ssb) [Aeromonas veronii strain LOID 15995]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTAATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAAAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456