Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS04_RS18140 Genome accession   NZ_CP121854
Coordinates   3833197..3833784 (+) Length   195 a.a.
NCBI ID   WP_279465387.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 13997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3834542..3850437 3833197..3833784 flank 758


Gene organization within MGE regions


Location: 3833197..3850437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS18140 ssb 3833197..3833784 (+) 588 WP_279465387.1 single-stranded DNA-binding protein Machinery gene
  QBS04_RS18145 - 3833950..3834273 (+) 324 WP_279460362.1 hypothetical protein -
  QBS04_RS18150 - 3834440..3835276 (+) 837 WP_279465388.1 site-specific integrase -
  QBS04_RS18155 - 3835300..3835485 (+) 186 WP_279465389.1 hypothetical protein -
  QBS04_RS18160 - 3835451..3836839 (+) 1389 WP_279465390.1 site-specific integrase -
  QBS04_RS18165 - 3836849..3838726 (+) 1878 WP_279465391.1 integrase -
  QBS04_RS18170 - 3838714..3839193 (+) 480 WP_271781090.1 hypothetical protein -
  QBS04_RS18175 - 3839190..3839630 (+) 441 WP_279465392.1 VPA1267 family protein -
  QBS04_RS18180 - 3839823..3840779 (+) 957 WP_279465393.1 helix-hairpin-helix domain-containing protein -
  QBS04_RS18185 - 3840736..3841791 (+) 1056 WP_279465394.1 ATP-dependent RecD-like DNA helicase -
  QBS04_RS18190 - 3842009..3842170 (+) 162 Protein_3502 IS5/IS1182 family transposase -
  QBS04_RS18195 - 3842429..3842779 (+) 351 WP_279465395.1 hypothetical protein -
  QBS04_RS18200 tet(E) 3843087..3844304 (-) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  QBS04_RS18205 tetR 3844385..3845006 (+) 622 Protein_3505 tetracycline resistance transcriptional repressor TetR -
  QBS04_RS18210 - 3845355..3845546 (-) 192 WP_017780887.1 hypothetical protein -
  QBS04_RS18215 - 3845756..3846226 (-) 471 WP_017780886.1 hypothetical protein -
  QBS04_RS18220 - 3846314..3846634 (+) 321 WP_279467491.1 helix-turn-helix transcriptional regulator -
  QBS04_RS18225 - 3846711..3847562 (-) 852 WP_279465396.1 DUF4113 domain-containing protein -
  QBS04_RS18230 - 3847510..3847665 (-) 156 WP_279465397.1 hypothetical protein -
  QBS04_RS18235 - 3847786..3848991 (-) 1206 WP_279466207.1 IS3 family transposase -
  QBS04_RS18240 - 3849475..3850437 (+) 963 WP_064336646.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21613.14 Da        Isoelectric Point: 5.9301

>NTDB_id=814807 QBS04_RS18140 WP_279465387.1 3833197..3833784(+) (ssb) [Aeromonas veronii strain ANYA 13997]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGSQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814807 QBS04_RS18140 WP_279465387.1 3833197..3833784(+) (ssb) [Aeromonas veronii strain ANYA 13997]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCAGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTAGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCAGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

54.922

98.974

0.544
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456
  ssb Neisseria meningitidis MC58

46.316

97.436

0.451