Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS09_RS15345 Genome accession   NZ_CP121848
Coordinates   3220080..3220667 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 14430     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3215080..3225667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS09_RS15320 cspA 3216387..3216599 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  QBS09_RS15325 yjbD 3217195..3217479 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  QBS09_RS15330 - 3217626..3218528 (-) 903 WP_201913424.1 cation diffusion facilitator family transporter -
  QBS09_RS15335 - 3218989..3219114 (+) 126 WP_019445191.1 hypothetical protein -
  QBS09_RS15340 - 3219187..3219930 (-) 744 WP_201913464.1 transporter substrate-binding domain-containing protein -
  QBS09_RS15345 ssb 3220080..3220667 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS09_RS15350 - 3221094..3221741 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS09_RS15355 - 3221741..3222184 (+) 444 WP_052447194.1 curli production assembly/transport protein CsgE -
  QBS09_RS15360 - 3222196..3222597 (+) 402 WP_042063493.1 curli assembly protein CsgF -
  QBS09_RS15365 - 3222605..3223444 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS09_RS15370 - 3223631..3224152 (+) 522 WP_201913422.1 curlin -
  QBS09_RS15375 - 3224187..3225638 (+) 1452 WP_201913420.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814724 QBS09_RS15345 WP_005340181.1 3220080..3220667(-) (ssb) [Aeromonas veronii strain ANYA 14430]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814724 QBS09_RS15345 WP_005340181.1 3220080..3220667(-) (ssb) [Aeromonas veronii strain ANYA 14430]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGTCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAACAGCGCCCGGCGCCTGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456