Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BADSM9389_RS19410 Genome accession   NZ_AP023184
Coordinates   4187242..4187781 (-) Length   179 a.a.
NCBI ID   WP_172895822.1    Uniprot ID   -
Organism   Buttiauxella agrestis strain DSM 9389     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4182242..4192781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BADSM9389_RS19380 (BADSM9389_38610) - 4182675..4183337 (-) 663 WP_172895817.1 glutathione S-transferase family protein -
  BADSM9389_RS19385 (BADSM9389_38620) soxR 4183622..4184080 (-) 459 WP_115631514.1 redox-sensitive transcriptional activator SoxR -
  BADSM9389_RS19390 (BADSM9389_38630) soxS 4184167..4184490 (+) 324 WP_034492462.1 superoxide response transcriptional regulator SoxS -
  BADSM9389_RS19395 (BADSM9389_38640) - 4184727..4185008 (+) 282 WP_034492460.1 YjcB family protein -
  BADSM9389_RS19400 (BADSM9389_38650) - 4185079..4185855 (-) 777 WP_172895819.1 ABC transporter substrate-binding protein -
  BADSM9389_RS19405 (BADSM9389_38660) - 4185871..4187049 (-) 1179 WP_172895820.1 M20 aminoacylase family protein -
  BADSM9389_RS19410 (BADSM9389_38670) ssb 4187242..4187781 (-) 540 WP_172895822.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BADSM9389_RS19415 (BADSM9389_38680) uvrA 4188009..4190840 (+) 2832 WP_172895824.1 excinuclease ABC subunit UvrA -
  BADSM9389_RS19420 (BADSM9389_38690) - 4191025..4191462 (+) 438 WP_172895826.1 hypothetical protein -
  BADSM9389_RS19425 (BADSM9389_38700) - 4191465..4191803 (+) 339 WP_172895828.1 hypothetical protein -
  BADSM9389_RS19430 (BADSM9389_38710) - 4191836..4192189 (-) 354 WP_172895830.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18957.99 Da        Isoelectric Point: 5.2456

>NTDB_id=81470 BADSM9389_RS19410 WP_172895822.1 4187242..4187781(-) (ssb) [Buttiauxella agrestis strain DSM 9389]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRAAGGAPAGGGAPGQQQGSWGQPQQPQQGGGNQFSGGAQSRPQQS
APAPSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=81470 BADSM9389_RS19410 WP_172895822.1 4187242..4187781(-) (ssb) [Buttiauxella agrestis strain DSM 9389]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGGAATCTGGGTCAAGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACTCTGGCCACGTCAGAGTCCTGGCGCGATAAGCAAACCGGCGAAACTAAAGAAAAAACTG
AATGGCACCGTGTTGTGCTATTCGGGAAACTGGCAGAAGTTGCAGGCGAATACCTGCGTAAAGGCTCCCAGGTTTATATC
GAAGGCGCATTGCAGACGCGTAAATGGACCGACCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTGGTTAACGTGGG
TGGCACGATGCAAATGTTGGGTGGCCGTGCAGCGGGCGGTGCTCCTGCCGGCGGTGGCGCTCCAGGCCAGCAGCAAGGTA
GTTGGGGTCAGCCTCAGCAACCACAGCAGGGTGGCGGCAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAGCAGAGC
GCTCCAGCGCCATCTAACAATGAACCACCAATGGATTTCGATGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.317

100

0.76
  ssb Glaesserella parasuis strain SC1401

54.839

100

0.57
  ssb Neisseria meningitidis MC58

46.961

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.475

Multiple sequence alignment