Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS37_RS03325 Genome accession   NZ_CP121845
Coordinates   638637..639224 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 15694     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633637..644224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS37_RS03290 - 633665..634573 (-) 909 WP_279476473.1 hypothetical protein -
  QBS37_RS03295 - 634575..635117 (-) 543 WP_279476474.1 hypothetical protein -
  QBS37_RS03300 - 635152..635673 (-) 522 WP_257724934.1 curlin -
  QBS37_RS03305 - 635860..636699 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS37_RS03310 - 636707..637108 (-) 402 WP_005355004.1 curli assembly protein CsgF -
  QBS37_RS03315 - 637120..637563 (-) 444 WP_064337428.1 curli production assembly/transport protein CsgE -
  QBS37_RS03320 - 637563..638210 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS37_RS03325 ssb 638637..639224 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS37_RS03330 - 639401..640117 (+) 717 WP_257724940.1 transporter substrate-binding domain-containing protein -
  QBS37_RS03335 - 640190..640315 (-) 126 WP_019445191.1 hypothetical protein -
  QBS37_RS03340 - 640777..641679 (+) 903 WP_075116113.1 cation diffusion facilitator family transporter -
  QBS37_RS03345 yjbD 641826..642110 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  QBS37_RS03350 cspA 642705..642917 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814653 QBS37_RS03325 WP_005340181.1 638637..639224(+) (ssb) [Aeromonas veronii strain ANYA 15694]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814653 QBS37_RS03325 WP_005340181.1 638637..639224(+) (ssb) [Aeromonas veronii strain ANYA 15694]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTATTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456