Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS15_RS17885 Genome accession   NZ_CP121842
Coordinates   3867868..3868455 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 16702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3862868..3873455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS15_RS17855 - 3862897..3864348 (-) 1452 WP_111901630.1 curlin -
  QBS15_RS17860 - 3864383..3864904 (-) 522 WP_111901629.1 curlin -
  QBS15_RS17865 - 3865091..3865930 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS15_RS17870 - 3865938..3866339 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  QBS15_RS17875 - 3866351..3866794 (-) 444 WP_005355005.1 curli production assembly/transport protein CsgE -
  QBS15_RS17880 - 3866794..3867441 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS15_RS17885 ssb 3867868..3868455 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS15_RS17890 - 3868621..3869946 (+) 1326 WP_043147737.1 site-specific integrase -
  QBS15_RS17895 - 3869939..3871507 (+) 1569 WP_174218922.1 site-specific integrase -
  QBS15_RS17900 - 3871517..3873394 (+) 1878 WP_034524358.1 integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814618 QBS15_RS17885 WP_005340181.1 3867868..3868455(+) (ssb) [Aeromonas veronii strain ANYA 16702]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814618 QBS15_RS17885 WP_005340181.1 3867868..3868455(+) (ssb) [Aeromonas veronii strain ANYA 16702]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGTCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAACAGCGCCCGGCGCCTGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456