Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS12_RS04670 Genome accession   NZ_CP121841
Coordinates   983840..984421 (-) Length   193 a.a.
NCBI ID   WP_279464237.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 972611..983675 983840..984421 flank 165


Gene organization within MGE regions


Location: 972611..984421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS12_RS04620 tetR 972611..973246 (-) 636 WP_017780888.1 tetracycline resistance transcriptional repressor TetR -
  QBS12_RS04625 tet(E) 973327..974544 (+) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  QBS12_RS04630 - 974632..975300 (-) 669 WP_017780890.1 hypothetical protein -
  QBS12_RS04635 - 975459..975620 (-) 162 Protein_868 IS5/IS1182 family transposase -
  QBS12_RS04640 - 975838..978000 (-) 2163 WP_279464233.1 AAA family ATPase -
  QBS12_RS04645 - 977997..978437 (-) 441 WP_279464234.1 VPA1267 family protein -
  QBS12_RS04650 - 978434..978913 (-) 480 WP_064173584.1 hypothetical protein -
  QBS12_RS04655 - 978901..980778 (-) 1878 WP_279464235.1 integrase -
  QBS12_RS04660 - 980788..982356 (-) 1569 WP_171269322.1 site-specific integrase -
  QBS12_RS04665 - 982353..983675 (-) 1323 WP_041207317.1 site-specific integrase -
  QBS12_RS04670 ssb 983840..984421 (-) 582 WP_279464237.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21341.87 Da        Isoelectric Point: 5.9301

>NTDB_id=814579 QBS12_RS04670 WP_279464237.1 983840..984421(-) (ssb) [Aeromonas veronii strain ANYA 18196]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGGWGQPQQAMQQPMNQQRPAPAPQQNM
QPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=814579 QBS12_RS04670 WP_279464237.1 983840..984421(-) (ssb) [Aeromonas veronii strain ANYA 18196]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGTGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAAG
GTGGCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAATCAGCAGCGCCCGGCGCCGGCTCCGCAGCAGAACATG
CAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCACCGATGGATTT
CGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.715
  ssb Glaesserella parasuis strain SC1401

53.927

98.964

0.534
  ssb Neisseria gonorrhoeae MS11

48.677

97.927

0.477
  ssb Neisseria meningitidis MC58

48.148

97.927

0.472