Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS27_RS01235 Genome accession   NZ_CP121840
Coordinates   255782..256369 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 18197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 243236..255617 255782..256369 flank 165


Gene organization within MGE regions


Location: 243236..256369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS27_RS01175 - 243350..243820 (+) 471 WP_017780886.1 hypothetical protein -
  QBS27_RS01180 - 244030..244221 (+) 192 WP_017780887.1 hypothetical protein -
  QBS27_RS01185 tetR 244553..245188 (-) 636 WP_017780888.1 tetracycline resistance transcriptional repressor TetR -
  QBS27_RS01190 tet(E) 245269..246486 (+) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  QBS27_RS01195 - 246574..247242 (-) 669 WP_017780890.1 hypothetical protein -
  QBS27_RS01200 - 247401..247562 (-) 162 Protein_224 IS5/IS1182 family transposase -
  QBS27_RS01205 - 247780..249942 (-) 2163 WP_279464233.1 AAA family ATPase -
  QBS27_RS01210 - 249939..250379 (-) 441 WP_279464234.1 VPA1267 family protein -
  QBS27_RS01215 - 250376..250855 (-) 480 WP_064173584.1 hypothetical protein -
  QBS27_RS01220 - 250843..252720 (-) 1878 WP_279490157.1 integrase -
  QBS27_RS01225 - 252730..254298 (-) 1569 WP_279490158.1 site-specific integrase -
  QBS27_RS01230 - 254295..255617 (-) 1323 WP_041207317.1 site-specific integrase -
  QBS27_RS01235 ssb 255782..256369 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814544 QBS27_RS01235 WP_005340181.1 255782..256369(-) (ssb) [Aeromonas veronii strain ANYA 18197]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814544 QBS27_RS01235 WP_005340181.1 255782..256369(-) (ssb) [Aeromonas veronii strain ANYA 18197]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456