Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS02_RS06140 Genome accession   NZ_CP121835
Coordinates   1338202..1338789 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 18462     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1338955..1351336 1338202..1338789 flank 166


Gene organization within MGE regions


Location: 1338202..1351336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS02_RS06140 ssb 1338202..1338789 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS02_RS06145 - 1338955..1340280 (+) 1326 WP_043147737.1 site-specific integrase -
  QBS02_RS06150 - 1340273..1341841 (+) 1569 WP_174218922.1 site-specific integrase -
  QBS02_RS06155 - 1341851..1343728 (+) 1878 WP_034524358.1 integrase -
  QBS02_RS06160 - 1343716..1344195 (+) 480 WP_021140823.1 hypothetical protein -
  QBS02_RS06165 - 1344192..1344632 (+) 441 WP_017780892.1 VPA1267 family protein -
  QBS02_RS06170 - 1344629..1346791 (+) 2163 WP_017780891.1 AAA family ATPase -
  QBS02_RS06175 - 1347009..1347170 (+) 162 Protein_1181 IS5/IS1182 family transposase -
  QBS02_RS06180 - 1347330..1347998 (+) 669 WP_017780890.1 hypothetical protein -
  QBS02_RS06185 tet(E) 1348086..1349303 (-) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  QBS02_RS06190 tetR 1349384..1350019 (+) 636 WP_017780888.1 tetracycline resistance transcriptional repressor TetR -
  QBS02_RS06195 - 1350351..1350542 (-) 192 WP_017780887.1 hypothetical protein -
  QBS02_RS06200 - 1350752..1351222 (-) 471 WP_017780886.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814488 QBS02_RS06140 WP_005340181.1 1338202..1338789(+) (ssb) [Aeromonas veronii strain ANYA 18462]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814488 QBS02_RS06140 WP_005340181.1 1338202..1338789(+) (ssb) [Aeromonas veronii strain ANYA 18462]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456