Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS23_RS19400 Genome accession   NZ_CP121833
Coordinates   4123430..4124017 (-) Length   195 a.a.
NCBI ID   WP_069529269.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18644     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4118430..4129017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS23_RS19385 - 4118511..4120574 (-) 2064 WP_226798857.1 integrase -
  QBS23_RS19390 - 4120571..4122019 (-) 1449 WP_279500777.1 site-specific integrase -
  QBS23_RS19395 - 4122181..4123269 (-) 1089 WP_279500778.1 site-specific integrase -
  QBS23_RS19400 ssb 4123430..4124017 (-) 588 WP_069529269.1 single-stranded DNA-binding protein Machinery gene
  QBS23_RS19405 - 4124444..4125091 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS23_RS19410 - 4125091..4125534 (+) 444 WP_058059297.1 curli production assembly/transport protein CsgE -
  QBS23_RS19415 - 4125546..4125947 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  QBS23_RS19420 - 4125955..4126794 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS23_RS19425 - 4126981..4127502 (+) 522 WP_158113825.1 curlin -
  QBS23_RS19430 - 4127537..4128988 (+) 1452 WP_236367703.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21556.09 Da        Isoelectric Point: 5.9301

>NTDB_id=814480 QBS23_RS19400 WP_069529269.1 4123430..4124017(-) (ssb) [Aeromonas veronii strain ANYA 18644]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
SMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814480 QBS23_RS19400 WP_069529269.1 4123430..4124017(-) (ssb) [Aeromonas veronii strain ANYA 18644]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCAGCTCCGCAGCAG
AGCATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCACCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456