Detailed information NTG0814443

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: QBS19_RS07240
• Genome accession: NZ_CP121832
• Coordinates: 1380567..1381154 (-)
• Length: 195 a.a.
• NCBI ID: WP_005340181.1
• Uniprot ID: A0A165S798
• Organism: Aeromonas veronii strain ANYA 18661
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1366677..1379810	1380567..1381154	flank	757

Gene organization within MGE regions

Location: 1366677..1381154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBS19_RS07160	-	1366791..1367261 (+)	471	WP_017780886.1	hypothetical protein	-
QBS19_RS07165	-	1367471..1367662 (+)	192	WP_017780887.1	hypothetical protein	-
QBS19_RS07170	tetR	1368010..1368630 (-)	621	WP_279460350.1	tetracycline resistance transcriptional repressor TetR	-
QBS19_RS07175	tet(E)	1368711..1369928 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
QBS19_RS07180	-	1370016..1370684 (-)	669	WP_017780890.1	hypothetical protein	-
QBS19_RS07185	-	1370843..1371004 (-)	162	Protein_1267	IS5/IS1182 family transposase	-
QBS19_RS07190	-	1371222..1372646 (-)	1425	WP_279460351.1	ATP-dependent RecD-like DNA helicase	-
QBS19_RS07195	-	1372798..1374003 (+)	1206	WP_279459134.1	IS3 family transposase	-
QBS19_RS07200	-	1373992..1374723 (-)	732	WP_279460352.1	helix-hairpin-helix domain-containing protein	-
QBS19_RS07205	-	1374720..1375160 (-)	441	WP_017780892.1	VPA1267 family protein	-
QBS19_RS07210	-	1375179..1375529 (-)	351	WP_279460353.1	hypothetical protein	-
QBS19_RS07215	-	1375626..1377503 (-)	1878	WP_034524358.1	integrase	-
QBS19_RS07220	-	1377601..1378902 (-)	1302	WP_279460356.1	site-specific integrase	-
QBS19_RS07225	-	1378868..1379083 (-)	216	WP_279460358.1	hypothetical protein	-
QBS19_RS07230	-	1379076..1379912 (-)	837	WP_279460360.1	site-specific integrase	-
QBS19_RS07235	-	1380079..1380402 (-)	324	WP_279460362.1	hypothetical protein	-
QBS19_RS07240	ssb	1380567..1381154 (-)	588	WP_005340181.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 195 a.a.
• Molecular weight: 21583.11 Da
• Isoelectric Point: 5.9301

>NTDB_id=814443 QBS19_RS07240 WP_005340181.1 1380567..1381154(-) (ssb) [Aeromonas veronii strain ANYA 18661]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 588 bp

>NTDB_id=814443 QBS19_RS07240 WP_005340181.1 1380567..1381154(-) (ssb) [Aeromonas veronii strain ANYA 18661]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGTCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAACAGCGCCCGGCGCCTGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

3D structure

• AlphaFold DB: A0A165S798

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.347	100	0.708
ssb	Glaesserella parasuis strain SC1401	53.886	98.974	0.533
ssb	Neisseria meningitidis MC58	46.597	97.949	0.456
ssb	Neisseria gonorrhoeae MS11	46.842	97.436	0.456