Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS21_RS18020 Genome accession   NZ_CP121817
Coordinates   3824882..3825469 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 19170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3819882..3830469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS21_RS17985 - 3819911..3820819 (-) 909 WP_279499330.1 hypothetical protein -
  QBS21_RS17990 - 3820816..3821361 (-) 546 WP_279499331.1 hypothetical protein -
  QBS21_RS17995 - 3821396..3821917 (-) 522 WP_107682195.1 curlin -
  QBS21_RS18000 - 3822105..3822944 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS21_RS18005 - 3822952..3823353 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  QBS21_RS18010 - 3823365..3823808 (-) 444 WP_118854321.1 curli production assembly/transport protein CsgE -
  QBS21_RS18015 - 3823808..3824455 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS21_RS18020 ssb 3824882..3825469 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS21_RS18025 - 3825606..3826349 (+) 744 WP_100646970.1 transporter substrate-binding domain-containing protein -
  QBS21_RS18030 - 3826422..3826547 (-) 126 WP_019445191.1 hypothetical protein -
  QBS21_RS18035 - 3827008..3827910 (+) 903 WP_118854332.1 cation diffusion facilitator family transporter -
  QBS21_RS18040 yjbD 3828057..3828341 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  QBS21_RS18045 cspA 3828936..3829148 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814427 QBS21_RS18020 WP_005340181.1 3824882..3825469(+) (ssb) [Aeromonas veronii strain ANYA 19170]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814427 QBS21_RS18020 WP_005340181.1 3824882..3825469(+) (ssb) [Aeromonas veronii strain ANYA 19170]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTTGTCTTCATGGGCAAGCTGGCAGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456