Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS33_RS06460 Genome accession   NZ_CP121816
Coordinates   1339616..1340203 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 19953     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1334616..1345203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS33_RS06435 cspA 1335923..1336135 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  QBS33_RS06440 yjbD 1336730..1337014 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  QBS33_RS06445 - 1337161..1338063 (-) 903 WP_101531675.1 cation diffusion facilitator family transporter -
  QBS33_RS06450 - 1338525..1338650 (+) 126 WP_019445191.1 hypothetical protein -
  QBS33_RS06455 - 1338723..1339466 (-) 744 WP_279497750.1 transporter substrate-binding domain-containing protein -
  QBS33_RS06460 ssb 1339616..1340203 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS33_RS06465 - 1340630..1341277 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS33_RS06470 - 1341277..1341720 (+) 444 WP_236318039.1 curli production assembly/transport protein CsgE -
  QBS33_RS06475 - 1341732..1342133 (+) 402 WP_042063493.1 curli assembly protein CsgF -
  QBS33_RS06480 - 1342141..1342980 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS33_RS06485 - 1343168..1343689 (+) 522 WP_245148040.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814391 QBS33_RS06460 WP_005340181.1 1339616..1340203(-) (ssb) [Aeromonas veronii strain ANYA 19953]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814391 QBS33_RS06460 WP_005340181.1 1339616..1340203(-) (ssb) [Aeromonas veronii strain ANYA 19953]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCACCACAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456