Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R8775_RS00115 Genome accession   NZ_AP026915
Coordinates   22184..22420 (+) Length   78 a.a.
NCBI ID   WP_050233459.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 17184..27420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS00105 - 20248..21086 (+) 839 Protein_14 IS630 family transposase -
  R8775_RS00110 - 21121..21918 (-) 798 Protein_15 transposase -
  R8775_RS00115 (PC0005_00160) comW 22184..22420 (+) 237 WP_050233459.1 sigma(X)-activator ComW Regulator
  R8775_RS00120 (PC0005_00170) - 22651..23937 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R8775_RS00125 (PC0005_00180) - 24179..25327 (-) 1149 WP_000876735.1 site-specific integrase -
  R8775_RS00130 (PC0005_00190) - 25499..26413 (-) 915 WP_317680939.1 HIRAN domain-containing protein -
  R8775_RS00135 (PC0005_00200) - 26426..27160 (-) 735 WP_001100508.1 S24 family peptidase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9648.09 Da        Isoelectric Point: 6.7051

>NTDB_id=81436 R8775_RS00115 WP_050233459.1 22184..22420(+) (comW) [Streptococcus pneumoniae strain PZ900700005]
MLQKIYEQMANFYDSIEEEYGSTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=81436 R8775_RS00115 WP_050233459.1 22184..22420(+) (comW) [Streptococcus pneumoniae strain PZ900700005]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTTCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGGTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744

Multiple sequence alignment