Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS05_RS02310 Genome accession   NZ_CP121795
Coordinates   444972..445547 (+) Length   191 a.a.
NCBI ID   WP_005306061.1    Uniprot ID   K1JJU3
Organism   Aeromonas dhakensis strain DAMIAN 12594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 439972..450547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS05_RS02300 uvrA 440871..443700 (-) 2830 Protein_419 excinuclease ABC subunit UvrA -
  QBS05_RS02305 - 443796..444455 (-) 660 WP_010635910.1 LuxR C-terminal-related transcriptional regulator -
  QBS05_RS02310 ssb 444972..445547 (+) 576 WP_005306061.1 single-stranded DNA-binding protein Machinery gene
  QBS05_RS02315 - 445717..446475 (+) 759 WP_017782171.1 transporter substrate-binding domain-containing protein -
  QBS05_RS02320 - 446559..446684 (-) 126 WP_019445191.1 hypothetical protein -
  QBS05_RS02325 - 447133..448011 (+) 879 WP_010635891.1 cation diffusion facilitator family transporter -
  QBS05_RS02330 - 448107..448391 (+) 285 WP_017785534.1 DUF3811 domain-containing protein -
  QBS05_RS02335 - 448880..449089 (+) 210 WP_005306081.1 cold-shock protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21162.54 Da        Isoelectric Point: 5.9247

>NTDB_id=814251 QBS05_RS02310 WP_005306061.1 444972..445547(+) (ssb) [Aeromonas dhakensis strain DAMIAN 12594]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=814251 QBS05_RS02310 WP_005306061.1 444972..445547(+) (ssb) [Aeromonas dhakensis strain DAMIAN 12594]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACCGAGGTGCTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAAGGCATGGGCGGTCAGTCCCAGGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAACATGCAGCAACAG
CAGGGCGGTTATAGCCGTCCGGCCCAGCAGCCGCAGTCCGCTCCGCCGGTATACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.388

100

0.712
  ssb Glaesserella parasuis strain SC1401

52.381

98.953

0.518
  ssb Neisseria gonorrhoeae MS11

47.059

97.906

0.461
  ssb Neisseria meningitidis MC58

45.699

97.382

0.445