Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QCB51_RS02015 Genome accession   NZ_CP121790
Coordinates   423443..423937 (-) Length   164 a.a.
NCBI ID   WP_252839640.1    Uniprot ID   -
Organism   Buchnera aphidicola (Sipha maydis) strain LE2927     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 418443..428937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCB51_RS02000 (QCB51_02000) - 420051..421652 (-) 1602 WP_284622257.1 peptide chain release factor 3 -
  QCB51_RS02005 (QCB51_02005) - 421899..422471 (-) 573 WP_252839319.1 NifU family protein -
  QCB51_RS02010 (QCB51_02010) - 422628..423365 (+) 738 WP_252839320.1 alpha/beta fold hydrolase -
  QCB51_RS02015 (QCB51_02015) ssb 423443..423937 (-) 495 WP_252839640.1 single-stranded DNA-binding protein Machinery gene
  QCB51_RS02020 (QCB51_02020) dnaB 424407..425780 (+) 1374 WP_252839321.1 replicative DNA helicase -
  QCB51_RS02025 (QCB51_02025) - 425924..426499 (+) 576 WP_252839322.1 YqgE/AlgH family protein -
  QCB51_RS02030 (QCB51_02030) ruvX 426502..426924 (+) 423 WP_252839323.1 Holliday junction resolvase RuvX -
  QCB51_RS02035 (QCB51_02035) - 426928..427590 (+) 663 WP_252839324.1 YggS family pyridoxal phosphate-dependent enzyme -
  QCB51_RS02040 (QCB51_02040) hemW 427641..428774 (+) 1134 WP_350030244.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18843.31 Da        Isoelectric Point: 9.1982

>NTDB_id=814213 QCB51_RS02015 WP_252839640.1 423443..423937(-) (ssb) [Buchnera aphidicola (Sipha maydis) strain LE2927]
MASRGVNKVILIGYLGQNPDIRYMTNGSAVANINLATSENWKDKNTGEVKEKTEWHKVVLFGKLAEIAGEYLKKGSQVYI
EGSLQTRRWKDKNNFERYTTEIIVNINGSMQMLGSRQNNLSVKKENFTKPVNNTFSKKKDSFEDDKKILLHDDTNMDFED
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=814213 QCB51_RS02015 WP_252839640.1 423443..423937(-) (ssb) [Buchnera aphidicola (Sipha maydis) strain LE2927]
ATGGCTAGTCGAGGAGTAAATAAAGTAATTTTAATAGGATATTTAGGGCAAAATCCTGATATTCGTTATATGACAAATGG
TTCAGCGGTAGCAAATATTAATTTAGCTACTTCAGAAAATTGGAAAGATAAAAATACTGGTGAAGTTAAAGAAAAAACAG
AATGGCATAAAGTAGTTTTATTTGGAAAATTAGCTGAAATTGCTGGTGAATATTTAAAAAAAGGTTCACAAGTATATATT
GAGGGTTCTTTACAAACAAGAAGATGGAAAGATAAAAATAATTTTGAAAGATATACGACAGAAATAATAGTAAATATTAA
TGGTTCTATGCAAATGTTAGGTTCTCGACAAAATAATTTAAGTGTAAAAAAAGAGAATTTCACAAAACCTGTGAATAATA
CTTTTTCAAAAAAGAAGGATTCTTTTGAAGATGATAAAAAAATTTTACTACATGATGATACAAATATGGATTTTGAAGAT
GAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.567
  ssb Glaesserella parasuis strain SC1401

43.094

100

0.476
  ssb Neisseria gonorrhoeae MS11

38.636

100

0.415
  ssb Neisseria meningitidis MC58

38.636

100

0.415